C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000486836 RP11-113A11.1-001 ENSG00000241723 9606 - 3:158275809-158276421 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastHeartKidneyLungMuscleOvaryTestisENST00000486836
Transcript ID Adipose Adrenal Breast Heart Kidney Lung Muscle Ovary Testis
ENST00000486836 0.027±0.00 0.222±0.00 0.746±0.00 0.066±0.00 0.028±0.00 0.233±0.18 0.073±0.00 0.227±0.00 0.102±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TK CIL_0008TK_0001 VISTA 3:157757953-158360211
CIL_00098J CIL_00098J_0001 VISTA 3:157833085-158434392
CIL_0007KJ CIL_0007KJ_0001 UCNEbase 3:157856332-158528467
CIL_0007SC CIL_0007SC_0001 VISTA 3:157864514-158466174
CIL_0008QV CIL_0008QV_0001 VISTA 3:157885521-158486853
CIL_0008BN CIL_0008BN_0001 VISTA 3:157971822-158572677
CIL_00086V CIL_00086V_0001 VISTA 3:157991733-158593047
CIL_0008BM CIL_0008BM_0001 VISTA 3:158007957-158609595
CIL_0008KO CIL_0008KO_0001 VISTA 3:158067861-158669043
CIL_0004JW CIL_0004JW_0002 CGP 3:158095954-158545730
CIL_000808 CIL_000808_0001 VISTA 3:158183764-158784540
CIL_000815 CIL_000815_0001 VISTA 3:158228062-158828791

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000105169 Gm4294-201 processed_pseudogene Mus_musculus 0 675
ENSMUST00000088480 Rpl15-ps3-001 processed_pseudogene Mus_musculus 0 669
ENSMUST00000112598 Rpl15-005 protein_coding Mus_musculus 0 669
ENSMUST00000079419 Rpl15-004 protein_coding Mus_musculus 0 669
ENSMUST00000100799 Rpl15-002 protein_coding Mus_musculus 0 669
ENSMUST00000080281 Rpl15-001 protein_coding Mus_musculus 0 669
ENSMUST00000081993 Gm10020-201 protein_coding Mus_musculus 0 664
ENSMUST00000119496 Gm10224-001 processed_pseudogene Mus_musculus 0 658
ENSMUST00000184247 Rpl15-ps2-001 processed_pseudogene Mus_musculus 0 643
ENSMUST00000121621 Gm12726-001 processed_pseudogene Mus_musculus 0 582
ENSMUST00000120953 Gm13413-001 processed_pseudogene Mus_musculus 0 556
ENSMUST00000121557 Gm13688-001 processed_pseudogene Mus_musculus 0 547

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