C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 4294
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000105169 Gm4294-201 ENSMUSG00000078377 10090 + 12:12023043-12023657 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainColonLiverMuscleOvaryPlacentaTestisENSMUST00000105169
Transcript ID Adipose Bladder Brain Colon Liver Muscle Ovary Placenta Testis
ENSMUST00000105169 0.078±0.00 44.062±0.00 9.591±13.46 0.147±0.02 26.012±36.48 0.095±0.00 0.201±0.10 0.069±0.03 0.082±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00094N CIL_00094N_0002 VISTA 12:11879096-12479918

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000307839 RPL15-001 protein_coding Homo_sapiens 0 898
ENST00000354811 RPL15-007 protein_coding Homo_sapiens 0 898
ENST00000391491 RPL15P3-001 processed_pseudogene Homo_sapiens 0 881
ENST00000412097 RPL15-011 protein_coding Homo_sapiens 0 743
ENST00000413699 RPL15-002 protein_coding Homo_sapiens 0 898
ENST00000414329 RP11-106M7.4-001 processed_pseudogene Homo_sapiens 0 678
ENST00000415719 RPL15-013 protein_coding Homo_sapiens 0 898
ENST00000416278 RP11-570G20.1-001 processed_pseudogene Homo_sapiens 0 643
ENST00000422218 RPL15-009 protein_coding Homo_sapiens 0 556
ENST00000422915 RP1-40G4P.1-001 processed_pseudogene Homo_sapiens 0 532
ENST00000429515 AC097523.1-001 processed_pseudogene Homo_sapiens 0 616
ENST00000432924 RPL15P18-001 processed_pseudogene Homo_sapiens 0 765
ENST00000434031 RPL15-014 protein_coding Homo_sapiens 0 756
ENST00000435882 RPL15-005 protein_coding Homo_sapiens 0 898
ENST00000436146 RPL15-008 nonsense_mediated_decay Homo_sapiens 0 846
ENST00000439829 AP002381.2-001 processed_pseudogene Homo_sapiens 0 665
ENST00000439981 RPL15P1-001 processed_pseudogene Homo_sapiens 0 545
ENST00000455192 AC092569.2-001 processed_pseudogene Homo_sapiens 0 241
ENST00000456530 RPL15-201 protein_coding Homo_sapiens 0 488
ENST00000465786 RPL15-006 retained_intron Homo_sapiens 0 481
ENST00000475247 RP11-214O14.1-001 processed_pseudogene Homo_sapiens 0 593
ENST00000475768 AP000797.1-001 processed_pseudogene Homo_sapiens 0 606
ENST00000477936 RP11-113C12.2-001 processed_pseudogene Homo_sapiens 0 715
ENST00000482912 RPL15P20-001 processed_pseudogene Homo_sapiens 0 641
ENST00000486836 RP11-113A11.1-001 processed_pseudogene Homo_sapiens 0 675
ENST00000487352 RP11-100N21.1-001 processed_pseudogene Homo_sapiens 0 843
ENST00000490223 RPL15-004 retained_intron Homo_sapiens 0 656
ENST00000490252 RPL15P2-001 processed_pseudogene Homo_sapiens 0 721
ENST00000560630 RP11-325E5.4-001 processed_pseudogene Homo_sapiens 0 436
ENST00000567709 RP11-151H2.3-001 processed_pseudogene Homo_sapiens 0 412
ENST00000611050 RPL15-202 protein_coding Homo_sapiens 0 898

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