C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted pseudogene 10020
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000081993 Gm10020-201 ENSMUSG00000057262 10090 - 15:52477614-52478228 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000081993
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000081993 2.566±2.37 1.079±0.30 20.526±20.44 12.383±12.23 0.083±0.00 4.963±0.82 2.528±0.65 0.295±0.22 17.440±27.37 3.583±0.33 4.885±3.08 2.106±3.43 1.974±0.83

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZT CIL_0007ZT_0002 VISTA 15:52034869-52635444

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006412 IEA translation
GO:0022625 IEA cytosolic large ribosomal subunit
GO:0044822 IEA poly(A) RNA binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000307839 RPL15-001 protein_coding Homo_sapiens 0 898
ENST00000354811 RPL15-007 protein_coding Homo_sapiens 0 898
ENST00000391491 RPL15P3-001 processed_pseudogene Homo_sapiens 0 881
ENST00000412097 RPL15-011 protein_coding Homo_sapiens 0 737
ENST00000413699 RPL15-002 protein_coding Homo_sapiens 0 898
ENST00000414329 RP11-106M7.4-001 processed_pseudogene Homo_sapiens 0 675
ENST00000415719 RPL15-013 protein_coding Homo_sapiens 0 898
ENST00000416278 RP11-570G20.1-001 processed_pseudogene Homo_sapiens 0 649
ENST00000422218 RPL15-009 protein_coding Homo_sapiens 0 551
ENST00000422915 RP1-40G4P.1-001 processed_pseudogene Homo_sapiens 0 532
ENST00000429515 AC097523.1-001 processed_pseudogene Homo_sapiens 0 610
ENST00000432924 RPL15P18-001 processed_pseudogene Homo_sapiens 0 765
ENST00000434031 RPL15-014 protein_coding Homo_sapiens 0 750
ENST00000435882 RPL15-005 protein_coding Homo_sapiens 0 898
ENST00000436146 RPL15-008 nonsense_mediated_decay Homo_sapiens 0 846
ENST00000439829 AP002381.2-001 processed_pseudogene Homo_sapiens 0 654
ENST00000439981 RPL15P1-001 processed_pseudogene Homo_sapiens 0 540
ENST00000455192 AC092569.2-001 processed_pseudogene Homo_sapiens 0 241
ENST00000456530 RPL15-201 protein_coding Homo_sapiens 0 483
ENST00000465786 RPL15-006 retained_intron Homo_sapiens 0 486
ENST00000475247 RP11-214O14.1-001 processed_pseudogene Homo_sapiens 0 588
ENST00000475768 AP000797.1-001 processed_pseudogene Homo_sapiens 0 601
ENST00000477936 RP11-113C12.2-001 processed_pseudogene Homo_sapiens 0 715
ENST00000482912 RPL15P20-001 processed_pseudogene Homo_sapiens 0 630
ENST00000486836 RP11-113A11.1-001 processed_pseudogene Homo_sapiens 0 664
ENST00000487352 RP11-100N21.1-001 processed_pseudogene Homo_sapiens 0 843
ENST00000490223 RPL15-004 retained_intron Homo_sapiens 0 656
ENST00000490252 RPL15P2-001 processed_pseudogene Homo_sapiens 0 715
ENST00000560630 RP11-325E5.4-001 processed_pseudogene Homo_sapiens 0 431
ENST00000567709 RP11-151H2.3-001 processed_pseudogene Homo_sapiens 0 412
ENST00000611050 RPL15-202 protein_coding Homo_sapiens 0 898

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