C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 35
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000533043 NPM1P35-001 ENSG00000255213 9606 + 11:62330946-62331813 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalColonHeartKidneyLiverMuscleTestisENST00000533043
Transcript ID Adrenal Colon Heart Kidney Liver Muscle Testis
ENST00000533043 0.013±0.00 0.012±0.00 0.082±0.00 0.026±0.00 0.023±0.00 0.047±0.00 0.024±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089X CIL_00089X_0001 VISTA 11:62298635-62900076

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000075641 Npm1-001 protein_coding Mus_musculus 0 913
ENSMUST00000109354 Npm1-002 protein_coding Mus_musculus 0 808
ENSMUST00000101375 Npm1-003 protein_coding Mus_musculus 0 806
ENSMUST00000164523 Gm5611-201 protein_coding Mus_musculus 0 708
ENSMUST00000120677 Gm12583-001 processed_pseudogene Mus_musculus 0 665
ENSMUST00000118871 Gm15484-001 processed_pseudogene Mus_musculus 0 645
ENSMUST00000172394 Gm17060-001 processed_pseudogene Mus_musculus 0 593
ENSMUST00000093201 Npm1-006 protein_coding Mus_musculus 0 580
ENSMUST00000118047 Gm14681-001 processed_pseudogene Mus_musculus 0 433
ENSMUST00000121029 Gm14776-001 processed_pseudogene Mus_musculus 0 407
ENSMUST00000117205 Gm13423-001 processed_pseudogene Mus_musculus 0 279
ENSMUST00000141881 Npm1-004 processed_transcript Mus_musculus 1e-21 108
ENSMUST00000146759 Npm1-005 processed_transcript Mus_musculus 0 255
ENSMUST00000168993 Gm7289-001 processed_pseudogene Mus_musculus 0 555

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