C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000550578 RP11-1136G11.6-001 ENSG00000257790 9606 + 12:53153272-53154484 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000550578
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000550578 0.120±0.00 0.077±0.00 0.068±0.00 0.132±0.00 0.061±0.00 0.057±0.00 0.340±0.00 0.147±0.00 0.182±0.00 0.153±0.00 0.025±0.00 0.047±0.00 0.128±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006TC CIL_0006TC_0001 CGP 12:53103518-53180909

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000163666 Eif4a1-001 protein_coding Mus_musculus 0 1517
ENSMUST00000122226 Eif4a-ps4-001 processed_pseudogene Mus_musculus 0 1511
ENSMUST00000072982 Gm5513-201 processed_pseudogene Mus_musculus 0 1413
ENSMUST00000120460 Gm12136-001 processed_pseudogene Mus_musculus 0 1107
ENSMUST00000118589 Gm15568-001 processed_pseudogene Mus_musculus 0 998
ENSMUST00000128519 Eif4a1-012 retained_intron Mus_musculus 0 953
ENSMUST00000102589 Eif4a1-013 nonsense_mediated_decay Mus_musculus 0 848
ENSMUST00000121086 Gm11258-001 processed_pseudogene Mus_musculus 0 702
ENSMUST00000123995 Eif4a1-002 retained_intron Mus_musculus 0 568
ENSMUST00000139299 Eif4a1-006 processed_transcript Mus_musculus 0 460
ENSMUST00000140310 Eif4a1-007 processed_transcript Mus_musculus 0 448
ENSMUST00000142214 Eif4a1-003 processed_transcript Mus_musculus 0 392
ENSMUST00000127677 Eif4a1-008 processed_transcript Mus_musculus 0 351
ENSMUST00000142348 Eif4a1-010 processed_transcript Mus_musculus 0 302
ENSMUST00000133067 Eif4a1-009 processed_transcript Mus_musculus 0 213
ENSMUST00000140186 Eif4a1-011 processed_transcript Mus_musculus 0 195

Loading