C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: polypyrimidine tract binding protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000011304 PTBP1 9606 + 19:797075-812327 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000349038 PTBP1-003 797425-812312 protein_coding
  ENST00000350092 PTBP1-019 799406-812222 protein_coding
  ENST00000356948 PTBP1-001 797075-812327 protein_coding
  ENST00000394601 PTBP1-002 797452-812312 protein_coding
  ENST00000585535 PTBP1-011 803577-808730 protein_coding
  ENST00000585856 PTBP1-007 807859-811021 retained_intron
  ENST00000585932 PTBP1-014 805096-811016 nonsense_mediated_decay
  ENST00000585956 PTBP1-016 804623-808646 protein_coding
  ENST00000586481 PTBP1-013 797427-804634 protein_coding
  ENST00000586944 PTBP1-004 797428-811289 retained_intron
  ENST00000587094 PTBP1-012 798428-804083 protein_coding
  ENST00000587136 PTBP1-008 804858-806660 retained_intron
  ENST00000587191 PTBP1-017 797490-808762 protein_coding
  ENST00000589575 PTBP1-006 797462-805017 protein_coding
  ENST00000589883 PTBP1-009 805508-807028 retained_intron
  ENST00000590887 PTBP1-005 797425-804582 retained_intron
  ENST00000592113 PTBP1-018 803575-806045 retained_intron
  ENST00000592804 PTBP1-010 804918-806036 retained_intron
  ENST00000621737 PTBP1-015 804389-810774 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000349038ENST00000350092ENST00000356948ENST00000394601ENST00000585856ENST00000585932ENST00000586944ENST00000587191ENST00000589575ENST00000589883ENST00000621737
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000349038 39.647±0.00 34.454±0.00 1.344±0.00 5.321±3.98 17.582±14.96 24.076±0.00 7.966±0.00 16.672±14.89 7.833±5.84 41.578±0.00 3.656±0.00 28.508±11.19 42.731±8.38 21.610±10.13
ENST00000350092 16.857±0.00 23.782±0.00 1.261±0.00 0.426±0.00 N/A 3.112±0.00 1.532±1.37 2.402±0.00 4.648±0.00 2.474±0.00 N/A 15.476±9.46 34.377±4.58 N/A
ENST00000356948 N/A N/A N/A N/A N/A N/A 0.238±0.00 N/A N/A N/A N/A 14.379±0.00 N/A N/A
ENST00000394601 N/A N/A N/A N/A 4.374±0.00 5.918±3.07 3.819±0.00 22.678±0.00 5.089±3.73 27.583±0.00 5.893±4.48 20.597±11.96 15.509±2.33 11.335±7.00
ENST00000585856 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.223±0.00 N/A N/A N/A N/A
ENST00000585932 N/A N/A 2.773±0.00 N/A 6.691±0.00 9.175±0.00 1.567±0.00 4.934±0.00 4.296±0.00 N/A N/A 11.796±0.00 N/A N/A
ENST00000586944 N/A N/A 0.727±0.00 2.034±0.00 1.103±0.00 N/A 0.105±0.00 0.889±0.00 0.887±0.00 0.851±0.00 N/A N/A N/A 3.199±0.00
ENST00000587191 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 115.126±0.00 116.533±0.00 42.499±0.00
ENST00000589575 N/A N/A N/A 1.260±0.00 N/A N/A 0.668±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000589883 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.114±0.00 N/A N/A N/A
ENST00000621737 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.366±0.00 N/A 32.597±0.00 N/A 12.240±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XG CIL_0008XG_0001 VISTA 19:477571-1083531
CIL_00051Q CIL_00051Q_0001 CGP 19:751126-812327
CIL_00008B CIL_00008B_0001 CGP 19:797075-821977

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000381 IDA regulation of alternative mRNA splicing, via spliceosome
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003723 TAS:IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005730 TAS nucleolus
GO:0006397 TAS:IEA mRNA processing
GO:0008187 TAS poly-pyrimidine tract binding
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0033119 IDA negative regulation of RNA splicing
GO:0036002 IDA pre-mRNA binding
GO:0044822 IDA poly(A) RNA binding
GO:0048025 IDA negative regulation of mRNA splicing, via spliceosome
GO:0051148 IDA negative regulation of muscle cell differentiation
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000019362 ptbp1a polypyrimidine tract binding protein 1a protein_coding Danio_rerio
ENSDARG00000031907 ptbp1b polypyrimidine tract binding protein 1b protein_coding Danio_rerio
ENSMUSG00000006498 Ptbp1 polypyrimidine tract binding protein 1 protein_coding Mus_musculus

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