C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polypyrimidine tract binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000589575 PTBP1-006 ENSG00000011304 9606 + 19:797462-805017 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartENST00000589575
Transcript ID Brain Heart
ENST00000589575 1.260±0.00 0.668±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XG CIL_0008XG_0001 VISTA 19:477571-1083531
CIL_00051Q CIL_00051Q_0001 CGP 19:751126-812327
CIL_00008B CIL_00008B_0001 CGP 19:797075-821977

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000057343 Ptbp1-008 nonsense_mediated_decay Mus_musculus 0 791
ENSMUST00000165704 Ptbp1-002 protein_coding Mus_musculus 0 791
ENSMUST00000172282 Ptbp1-001 protein_coding Mus_musculus 0 791
ENSMUST00000168988 Ptbp1-013 retained_intron Mus_musculus 0 649
ENSMUST00000165153 Ptbp1-004 retained_intron Mus_musculus 0 643
ENSMUST00000171216 Ptbp1-016 retained_intron Mus_musculus 0 610
ENSMUST00000099958 Ptbp1-009 processed_transcript Mus_musculus 0 568
ENSMUST00000095457 Ptbp1-005 protein_coding Mus_musculus 0 555
ENSMUST00000169091 Ptbp1-015 protein_coding Mus_musculus 0 259
ENSMUST00000169483 Ptbp1-012 nonsense_mediated_decay Mus_musculus 0 237
ENSDART00000040308 ptbp3-201 protein_coding Danio_rerio 5e-40 169
ENSDART00000146727 ptbp3-001 protein_coding Danio_rerio 5e-40 169

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