C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: keratin 16
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000593067 KRT16-003 ENSG00000186832 9606 - 17:41610409-41612899 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartKidneyLiverOvaryPlacentaTestisENST00000593067
Transcript ID Brain Breast Heart Kidney Liver Ovary Placenta Testis
ENST00000593067 0.090±0.00 4.836±4.57 0.059±0.00 0.174±0.00 0.106±0.00 228.250±222.74 0.607±0.22 0.095±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00056U CIL_00056U_000N CGP 17:41582279-41615899
CIL_00056U CIL_00056U_000M CGP 17:41609778-41624842

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005882 IEA intermediate filament

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000007280 Krt16-001 protein_coding Mus_musculus 0 898
ENSMUST00000121423 Gm11597-001 unprocessed_pseudogene Mus_musculus 0 837
ENSMUST00000007272 Krt14-001 protein_coding Mus_musculus 0 804
ENSMUST00000080893 Krt17-001 protein_coding Mus_musculus 0 715
ENSMUST00000137265 Krt14-002 processed_transcript Mus_musculus 0 630
ENSMUST00000017270 Krt42-001 protein_coding Mus_musculus 0 621
ENSMUST00000007275 Krt13-001 protein_coding Mus_musculus 0 363
ENSMUST00000007317 Krt19-001 protein_coding Mus_musculus 0 355
ENSMUST00000126460 Krt19-002 processed_transcript Mus_musculus 0 289
ENSMUST00000107406 Krt42-002 retained_intron Mus_musculus 0 276

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