C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin, beta pseudogene 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000594933 ACTBP12-002 ENSG00000233125 9606 - 1:92228581-92229435 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000594933
Transcript ID Adipose Adrenal Brain Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000594933 0.034±0.00 0.419±0.00 0.092±0.00 0.016±0.00 0.052±0.00 0.015±0.00 0.076±0.00 0.103±0.00 1.200±1.63 0.050±0.00 0.143±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005ZU CIL_0005ZU_0001 CGP 1:92167052-92245813
CIL_0007CA CIL_0007CA_0002 CGP 1:92217940-92298987

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000106215 Actg1-201 protein_coding Mus_musculus 0 767
ENSMUST00000071555 Actg1-001 protein_coding Mus_musculus 0 767
ENSMUST00000062147 Actg1-006 protein_coding Mus_musculus 0 652
ENSMUST00000082300 Gm8399-201 pseudogene Mus_musculus 0 468
ENSMUST00000121430 Gm12715-001 processed_pseudogene Mus_musculus 0 446
ENSMUST00000167721 Actb-002 protein_coding Mus_musculus 0 420
ENSMUST00000100497 Actb-001 protein_coding Mus_musculus 0 420
ENSMUST00000131103 Actg1-002 nonsense_mediated_decay Mus_musculus 0 407
ENSMUST00000078717 Lrrc58-001 protein_coding Mus_musculus 0 387
ENSMUST00000119947 Gm15725-001 transcribed_processed_pseudogene Mus_musculus 0 381
ENSMUST00000118518 Gm12003-001 processed_pseudogene Mus_musculus 0 368
ENSMUST00000146697 Gm8464-001 transcribed_processed_pseudogene Mus_musculus 9e-38 161
ENSMUST00000140208 Gm8464-002 processed_transcript Mus_musculus 9e-38 161
ENSMUST00000151942 Gm4750-001 transcribed_processed_pseudogene Mus_musculus 9e-38 161
ENSMUST00000152262 Gm4750-002 processed_transcript Mus_musculus 9e-38 161

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