C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 12003
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000118518 Gm12003-001 ENSMUSG00000083859 10090 - 11:12936834-12937938 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartLiverLungOvaryPlacentaTestisENSMUST00000118518
Transcript ID Adipose Bladder Brain Breast Heart Liver Lung Ovary Placenta Testis
ENSMUST00000118518 0.046±0.01 0.051±0.03 0.049±0.03 0.060±0.01 0.025±0.00 0.009±0.00 0.042±0.00 0.134±0.09 0.035±0.01 0.027±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000054987 actb1-001 protein_coding Danio_rerio 0 795
ENSDART00000141737 actb2-001 protein_coding Danio_rerio 0 782
ENSDART00000055194 actb2-007 protein_coding Danio_rerio 0 782
ENSDART00000062370 actc1a-001 protein_coding Danio_rerio 0 647
ENSDART00000080664 protein_coding Danio_rerio 0 630
ENSDART00000114549 hm:zewp0073-201 protein_coding Danio_rerio 0 625
ENSDART00000058629 acta1b-001 protein_coding Danio_rerio 0 623
ENSDART00000052838 acta1a-001 protein_coding Danio_rerio 0 621
ENSDART00000055136 actc1b-201 protein_coding Danio_rerio 0 601
ENSDART00000066430 acta2-201 protein_coding Danio_rerio 0 593
ENSDART00000149990 acta2-001 protein_coding Danio_rerio 0 569
ENSDART00000134020 actb2-003 processed_transcript Danio_rerio 0 398
ENSDART00000148290 actb2-002 nonsense_mediated_decay Danio_rerio 0 390
ENST00000224784 ACTA2-001 protein_coding Homo_sapiens 0 614
ENST00000331789 ACTB-001 protein_coding Homo_sapiens 0 944
ENST00000331925 ACTG1-001 protein_coding Homo_sapiens 0 1009
ENST00000345517 ACTG2-001 protein_coding Homo_sapiens 0 664
ENST00000356920 POTEE-001 protein_coding Homo_sapiens 0 791
ENST00000357462 POTEF-201 protein_coding Homo_sapiens 0 780
ENST00000366683 ACTA1-201 protein_coding Homo_sapiens 0 230
ENST00000366684 ACTA1-001 protein_coding Homo_sapiens 0 614
ENST00000397487 POTEKP-001 unprocessed_pseudogene Homo_sapiens 0 802
ENST00000403258 ACTBP8-001 processed_pseudogene Homo_sapiens 0 652
ENST00000409602 POTEJ-001 protein_coding Homo_sapiens 0 797
ENST00000409624 ACTG2-002 protein_coding Homo_sapiens 0 664
ENST00000409731 ACTG2-008 protein_coding Homo_sapiens 0 545
ENST00000409914 POTEF-001 protein_coding Homo_sapiens 0 780
ENST00000415776 ACTG1P2-001 processed_pseudogene Homo_sapiens 0 725
ENST00000415794 ACTG1P1-001 processed_pseudogene Homo_sapiens 0 641
ENST00000417657 LA16c-3G11.7-001 processed_pseudogene Homo_sapiens 0 743
ENST00000418351 ACTBP7-001 processed_pseudogene Homo_sapiens 0 660
ENST00000420887 RP11-259P15.3-001 processed_pseudogene Homo_sapiens 0 342
ENST00000423183 ACTG1P12-001 processed_pseudogene Homo_sapiens 0 656
ENST00000423293 RP11-12M9.4-001 processed_pseudogene Homo_sapiens 0 457
ENST00000423783 POTENP-001 processed_pseudogene Homo_sapiens 0 521
ENST00000425123 ACTG1P4-001 processed_pseudogene Homo_sapiens 0 671
ENST00000425411 ACTG1P11-001 processed_pseudogene Homo_sapiens 0 725
ENST00000425660 ACTB-002 nonsense_mediated_decay Homo_sapiens 0 678
ENST00000428275 ACTG1P10-001 processed_pseudogene Homo_sapiens 0 512
ENST00000431536 RP4-706L14.2-001 processed_pseudogene Homo_sapiens 0 586
ENST00000435871 ACTBP12-001 transcribed_processed_pseudogene Homo_sapiens 0 363
ENST00000437653 RP11-809F4.2-001 processed_pseudogene Homo_sapiens 0 483
ENST00000438902 ACTG2-005 nonsense_mediated_decay Homo_sapiens 0 545
ENST00000441772 AC139143.2-001 processed_pseudogene Homo_sapiens 0 261
ENST00000446382 ACTG1P14-001 processed_pseudogene Homo_sapiens 0 697
ENST00000451531 POTEI-001 protein_coding Homo_sapiens 0 802
ENST00000457622 ACTG1P9-001 processed_pseudogene Homo_sapiens 0 745
ENST00000458208 ACTA2-201 protein_coding Homo_sapiens 0 614
ENST00000462494 ACTB-003 retained_intron Homo_sapiens 0 676
ENST00000464611 ACTB-013 processed_transcript Homo_sapiens 0 320
ENST00000486001 RP11-4K3__A.5-001 processed_pseudogene Homo_sapiens 0 398
ENST00000491397 AMY2B-003 processed_transcript Homo_sapiens 0 671
ENST00000493945 ACTB-004 retained_intron Homo_sapiens 0 411
ENST00000502306 CTD-2313D3.1-001 processed_pseudogene Homo_sapiens 0 505
ENST00000507366 CTC-512J14.7-001 processed_pseudogene Homo_sapiens 0 627
ENST00000512165 CH17-12M21.1-001 processed_pseudogene Homo_sapiens 0 435
ENST00000515712 ACTBP2-001 processed_pseudogene Homo_sapiens 0 710
ENST00000567299 CTC-543D15.1-001 processed_pseudogene Homo_sapiens 0 305
ENST00000570019 RP11-602M11.3-001 processed_pseudogene Homo_sapiens 0 472
ENST00000572105 ACTG1-015 nonsense_mediated_decay Homo_sapiens 0 592
ENST00000573283 ACTG1-003 protein_coding Homo_sapiens 0 1009
ENST00000574671 ACTG1-008 retained_intron Homo_sapiens 0 664
ENST00000575087 ACTG1-002 protein_coding Homo_sapiens 0 1009
ENST00000575842 ACTG1-012 protein_coding Homo_sapiens 0 1009
ENST00000576209 ACTG1-009 retained_intron Homo_sapiens 0 917
ENST00000576544 ACTG1-006 nonsense_mediated_decay Homo_sapiens 0 1009
ENST00000576917 ACTG1-004 retained_intron Homo_sapiens 0 377
ENST00000594933 ACTBP12-002 processed_transcript Homo_sapiens 0 368
ENST00000603793 CTD-2026C7.1-001 transcribed_processed_pseudogene Homo_sapiens 0 340
ENST00000615544 ACTG1-201 protein_coding Homo_sapiens 0 1009

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