C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptotagmin binding, cytoplasmic RNA interacting protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000173801 Syncrip-002 ENSMUSG00000032423 10090 - 9:88455578-88482555 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverOvaryPlacentaTestisENSMUST00000173801
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Ovary Placenta Testis
ENSMUST00000173801 6.057±0.00 11.475±0.00 4.197±0.00 4.709±0.00 2.501±0.15 5.100±0.00 4.923±3.37 2.916±1.11 10.651±0.22 5.147±1.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007K0 CIL_0007K0_0002 UCNEbase 9:87376892-88455782
CIL_0007TL CIL_0007TL_0002 VISTA 9:87895357-88499255
CIL_0005XI CIL_0005XI_0002 CGP 9:88376750-88456616
CIL_0005XJ CIL_0005XJ_0002 CGP 9:88407432-88482574

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0001649 IEA osteoblast differentiation
GO:0005515 IEA protein binding
GO:0005737 IDA cytoplasm
GO:0006397 IEA mRNA processing
GO:0008143 IDA poly(A) binding
GO:0008380 IEA RNA splicing
GO:0016020 IEA membrane
GO:0017148 IEA negative regulation of translation
GO:0030529 ISS ribonucleoprotein complex
GO:0044822 IEA poly(A) RNA binding
GO:0070934 IEA CRD-mediated mRNA stabilization
GO:0070937 ISS CRD-mediated mRNA stability complex
GO:0071013 IEA catalytic step 2 spliceosome
GO:0071204 IDA histone pre-mRNA 3'end processing complex
GO:0071346 IEA cellular response to interferon-gamma
GO:0097452 IEA GAIT complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000129870 syncrip-201 protein_coding Danio_rerio 0 340
ENSDART00000058779 syncrip-001 protein_coding Danio_rerio 0 340
ENST00000355238 SYNCRIP-002 protein_coding Homo_sapiens 0 3018
ENST00000369622 SYNCRIP-001 protein_coding Homo_sapiens 0 4141
ENST00000434910 RP4-775C13.1-001 processed_pseudogene Homo_sapiens 0 2538
ENST00000444272 SYNCRIP-003 protein_coding Homo_sapiens 0 961
ENST00000503906 RP11-321N4.5-001 nonsense_mediated_decay Homo_sapiens 0 455
ENST00000616122 SYNCRIP-201 protein_coding Homo_sapiens 0 2451

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