C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000V9_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000075903-ENSDARG00000056059 CGP 7955 12:20085768-20124350
GeneTranscriptPositionBiotype
ENSDARG00000056059 (rangap1b)
Ran GTPase activating protein 1b 		ENSDART00000078484 (rangap1b-001) 20104208-20124350 protein_coding
ENSDART00000142253 (rangap1b-002) 20120512-20124328 protein_coding
ENSDARG00000075903 (chadlb)
chondroadherin-like b 		ENSDART00000111167 (chadlb-201) 20085768-20101940 protein_coding
ENSDART00000153248 (chadlb-001) 20085768-20104116 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0000V9_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000100399-ENSG00000100401 CGP 9606 22:41229510-41286251
GeneTranscriptPositionBiotype
ENSG00000100395 (L3MBTL2)
l(3)mbt-like 2 (Drosophila) 		ENST00000216237 (L3MBTL2-001) 41205205-41231271 protein_coding
ENST00000449635 (L3MBTL2-008) 41209696-41221367 protein_coding
ENST00000450939 (L3MBTL2-009) 41209696-41224165 nonsense_mediated_decay
ENST00000452106 (L3MBTL2-005) 41205324-41231271 nonsense_mediated_decay
ENST00000453659 (L3MBTL2-007) 41205312-41210008 nonsense_mediated_decay
ENST00000466589 (L3MBTL2-004) 41205309-41230654 retained_intron
ENST00000479978 (L3MBTL2-002) 41205321-41231270 retained_intron
ENST00000481902 (L3MBTL2-003) 41205282-41227810 retained_intron
ENST00000489136 (L3MBTL2-006) 41205302-41217173 processed_transcript
ENSG00000100399 (CHADL)
chondroadherin-like 		ENST00000216241 (CHADL-001) 41229513-41240934 protein_coding
ENST00000417999 (CHADL-002) 41229510-41239621 protein_coding
ENST00000455425 (CHADL-003) 41235140-41240894 protein_coding
ENSG00000100401 (RANGAP1)
Ran GTPase activating protein 1 		ENST00000356244 (RANGAP1-001) 41245611-41286251 protein_coding
ENST00000405486 (RANGAP1-003) 41245611-41285965 protein_coding
ENST00000418067 (RANGAP1-008) 41268097-41281638 protein_coding
ENST00000422838 (RANGAP1-006) 41280933-41285905 protein_coding
ENST00000446258 (RANGAP1-007) 41256021-41274660 protein_coding
ENST00000452543 (RANGAP1-009) 41264744-41281621 protein_coding
ENST00000455915 (RANGAP1-004) 41245615-41282514 protein_coding
ENSG00000274552 (MIR6889)
microRNA 6889 		ENST00000613185 (MIR6889-201) 41252992-41253050 miRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0000V9_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000063765-ENSMUSG00000022391 CGP 10090 15:81678296-81729919
GeneTranscriptPositionBiotype
ENSMUSG00000022391 (Rangap1)
RAN GTPase activating protein 1 		ENSMUST00000052374 (Rangap1-201) 81704248-81729919 protein_coding
ENSMUST00000170134 (Rangap1-202) 81704248-81729919 protein_coding
ENSMUST00000171115 (Rangap1-203) 81704618-81729866 protein_coding
ENSMUSG00000022394 (L3mbtl2)
l(3)mbt-like 2 (Drosophila) 		ENSMUST00000023029 (L3mbtl2-001) 81663889-81688315 protein_coding
ENSMUST00000172568 (L3mbtl2-003) 81663956-81688299 processed_transcript
ENSMUST00000172620 (L3mbtl2-004) 81663954-81688305 retained_intron
ENSMUST00000172748 (L3mbtl2-005) 81663956-81688315 protein_coding
ENSMUST00000173105 (L3mbtl2-010) 81668678-81670369 retained_intron
ENSMUST00000173607 (L3mbtl2-009) 81668747-81675633 processed_transcript
ENSMUST00000173761 (L3mbtl2-006) 81686022-81687187 retained_intron
ENSMUST00000174229 (L3mbtl2-002) 81663934-81688305 protein_coding
ENSMUST00000174274 (L3mbtl2-011) 81664001-81682065 processed_transcript
ENSMUST00000174401 (L3mbtl2-007) 81682009-81683850 retained_intron
ENSMUST00000174497 (L3mbtl2-008) 81675522-81677294 protein_coding
ENSMUSG00000063765 (Chadl)
chondroadherin-like 		ENSMUST00000072910 (Chadl-001) 81686165-81697287 protein_coding
ENSMUST00000173598 (Chadl-003) 81678296-81694028 nonsense_mediated_decay
ENSMUST00000173898 (Chadl-002) 81686181-81694207 nonsense_mediated_decay

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000V9_0001ENSDARG00000056059ENSDART00000078484ENSDART00000142253ENSDARG00000075903ENSDART00000111167ENSDART00000153248CIL_0000V9_0002ENSG00000100395ENST00000216237ENST00000449635ENST00000450939ENST00000452106ENST00000453659ENST00000466589ENST00000479978ENST00000481902ENST00000489136ENSG00000100399ENST00000216241ENST00000417999ENST00000455425ENSG00000100401ENST00000356244ENST00000405486ENST00000418067ENST00000422838ENST00000446258ENST00000452543ENST00000455915ENSG00000274552ENST00000613185CIL_0000V9_0003ENSMUSG00000022391ENSMUST00000052374ENSMUST00000170134ENSMUST00000171115ENSMUSG00000022394ENSMUST00000023029ENSMUST00000172568ENSMUST00000172620ENSMUST00000172748ENSMUST00000173105ENSMUST00000173607ENSMUST00000173761ENSMUST00000174229ENSMUST00000174274ENSMUST00000174401ENSMUST00000174497ENSMUSG00000063765ENSMUST00000072910ENSMUST00000173598ENSMUST00000173898
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000V9_0001ENSDARG00000056059ENSDART00000078484ENSDARG00000075903ENSDART00000111167ENSDART00000153248CIL_0000V9_0002ENSG00000100395ENST00000216237ENST00000449635ENST00000452106ENST00000466589ENST00000479978ENST00000481902ENSG00000100399ENST00000216241ENST00000417999ENSG00000100401ENST00000356244ENST00000405486ENST00000418067ENST00000446258ENST00000452543ENST00000455915ENSG00000274552ENST00000613185CIL_0000V9_0003ENSMUSG00000022391ENSMUST00000052374ENSMUST00000170134ENSMUST00000171115ENSMUSG00000022394ENSMUST00000023029ENSMUST00000172620ENSMUST00000172748ENSMUST00000174229ENSMUSG00000063765ENSMUST00000072910ENSMUST00000173598ENSMUST00000173898
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000056059 ENSDART00000078484 N/A N/A N/A 2.440±0.90 N/A N/A 3.144±1.44 8.403±2.39 1.809±0.00 N/A 1.995±0.00 N/A N/A N/A
ENSDART00000142253 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000075903 ENSDART00000111167 N/A N/A N/A 0.083±0.01 N/A N/A 0.072±0.00 0.027±0.00 0.066±0.00 N/A 0.024±0.00 N/A N/A N/A
ENSDART00000153248 N/A N/A N/A 0.224±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000100395 ENST00000216237 2.471±0.00 7.348±0.00 0.249±0.00 4.857±1.04 4.178±2.66 5.101±0.00 1.274±0.47 2.630±0.00 2.104±1.10 3.986±0.00 1.192±0.00 8.760±5.37 9.534±3.00 5.853±0.39
ENST00000449635 N/A N/A N/A N/A N/A 1.850±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000450939 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000452106 N/A 2.926±0.00 N/A N/A N/A N/A 1.742±0.00 4.210±0.00 1.939±0.00 N/A 1.761±0.00 N/A N/A 3.475±0.00
ENST00000453659 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466589 N/A N/A 0.502±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479978 0.427±0.00 N/A N/A N/A 0.733±0.00 N/A 0.173±0.00 N/A N/A N/A N/A 0.737±0.00 N/A N/A
ENST00000481902 N/A N/A N/A N/A N/A 1.541±0.00 N/A N/A 1.193±0.00 N/A N/A N/A N/A N/A
ENST00000489136 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000100399 ENST00000216241 N/A N/A N/A 12.517±0.00 N/A 6.214±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000417999 N/A N/A N/A N/A N/A N/A 4.318±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000455425 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000100401 ENST00000356244 18.523±0.00 17.970±0.00 0.617±0.00 33.163±20.47 8.348±7.19 9.304±8.88 4.892±3.87 12.627±10.17 10.931±8.77 23.173±21.65 7.975±6.35 19.430±9.97 27.290±6.88 43.259±13.28
ENST00000405486 N/A N/A N/A N/A N/A N/A 0.230±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000418067 N/A N/A N/A N/A N/A 1.236±0.00 N/A N/A N/A N/A N/A 5.409±0.00 N/A N/A
ENST00000422838 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000446258 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 38.576±0.00 40.417±0.00 132.816±0.00
ENST00000452543 N/A N/A N/A N/A 2.663±0.00 N/A 1.536±0.00 N/A 3.347±0.00 1.897±0.00 N/A N/A N/A 57.328±0.00
ENST00000455915 N/A N/A 0.090±0.00 N/A N/A 0.394±0.00 N/A N/A 0.484±0.00 0.226±0.00 N/A N/A N/A N/A
ENSG00000274552 ENST00000613185 N/A N/A N/A 1.068±0.00 N/A N/A 1.937±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022391 ENSMUST00000052374 13.772±3.05 15.512±2.30 12.178±0.65 37.759±2.64 11.676±3.39 18.693±1.90 5.698±0.72 10.657±2.17 28.042±18.20 11.189±0.84 8.378±1.07 18.912±3.16 37.535±18.60 N/A
ENSMUST00000170134 2.628±0.00 2.109±0.33 2.287±0.10 N/A 2.922±0.55 3.636±0.83 0.990±0.15 2.817±1.21 2.311±0.59 2.314±0.62 1.036±0.00 3.728±0.98 N/A N/A
ENSMUST00000171115 1.729±0.00 N/A N/A 41.665±0.00 N/A N/A N/A 1.662±0.00 N/A N/A N/A 20.627±0.00 28.533±21.00 88.995±8.09
ENSMUSG00000022394 ENSMUST00000023029 4.950±0.63 4.098±0.70 8.446±0.70 6.924±1.02 4.800±0.71 3.459±0.41 2.419±0.20 3.904±0.23 5.363±2.83 4.013±0.46 3.138±0.40 4.837±1.49 9.910±4.66 8.697±2.86
ENSMUST00000172568 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000172620 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.465±0.00 N/A 0.278±0.00
ENSMUST00000172748 N/A N/A N/A 4.956±0.00 2.774±0.00 N/A N/A N/A N/A N/A 0.647±0.00 3.010±0.00 3.023±1.32 1.844±0.00
ENSMUST00000173105 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173607 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173761 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174229 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.923±0.00 N/A N/A N/A
ENSMUST00000174274 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174401 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174497 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000063765 ENSMUST00000072910 1.721±0.00 1.407±0.39 N/A 3.968±0.06 2.710±0.60 1.329±0.13 N/A 2.977±0.00 0.377±0.00 1.094±0.00 N/A 1.809±0.42 N/A N/A
ENSMUST00000173598 N/A N/A N/A N/A 1.469±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173898 N/A 7.777±1.01 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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