C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001AZ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000140538-ENSG00000259494 CGP 9606 15:87859751-88467419
GeneTranscriptPositionBiotype
ENSG00000140538 (NTRK3)
neurotrophic tyrosine kinase, receptor, type 3 		ENST00000317501 (NTRK3-002) 87977364-88256159 protein_coding
ENST00000355254 (NTRK3-201) 87876757-88256731 protein_coding
ENST00000357724 (NTRK3-202) 87876757-88256731 protein_coding
ENST00000360948 (NTRK3-203) 87876757-88256731 protein_coding
ENST00000394480 (NTRK3-001) 87859751-88256747 protein_coding
ENST00000540489 (NTRK3-204) 87979345-88256731 protein_coding
ENST00000542733 (NTRK3-003) 87916273-88205933 protein_coding
ENST00000557856 (NTRK3-004) 87876791-88256177 protein_coding
ENST00000557897 (NTRK3-009) 88072601-88126361 processed_transcript
ENST00000558306 (NTRK3-017) 87979054-88127191 nonsense_mediated_decay
ENST00000558576 (NTRK3-007) 87916262-87933090 protein_coding
ENST00000558676 (NTRK3-015) 87926656-88256179 protein_coding
ENST00000559067 (NTRK3-013) 88255906-88256768 processed_transcript
ENST00000559188 (NTRK3-005) 88137461-88252622 protein_coding
ENST00000559680 (NTRK3-008) 87931082-87940735 processed_transcript
ENST00000559764 (NTRK3-011) 88131969-88136478 processed_transcript
ENST00000560017 (NTRK3-010) 88072551-88135938 protein_coding
ENST00000560201 (NTRK3-016) 87977367-87978803 processed_transcript
ENST00000560739 (NTRK3-006) 88072424-88099265 processed_transcript
ENSG00000259183 (MED28P6)
mediator complex subunit 28 pseudogene 6 		ENST00000558776 (MED28P6-001) 88143935-88144165 processed_pseudogene
ENSG00000259494 (MRPL46)
mitochondrial ribosomal protein L46 		ENST00000312475 (MRPL46-001) 88459476-88467419 protein_coding
ENST00000558531 (MRPL46-005) 88465013-88467390 protein_coding
ENST00000558660 (MRPL46-002) 88459477-88465747 retained_intron
ENST00000559538 (MRPL46-003) 88459478-88464813 nonsense_mediated_decay
ENST00000560703 (MRPL46-004) 88459608-88467389 nonsense_mediated_decay
ENSG00000260305 (NTRK3-AS1)
NTRK3 antisense RNA 1 		ENST00000569588 (NTRK3-AS1-001) 88252730-88271066 lincRNA
CIL_0001AZ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000059146-ENSMUSG00000030612 CGP 10090 7:78192362-78783531
GeneTranscriptPositionBiotype
ENSMUSG00000030611 (Mrps11)
mitochondrial ribosomal protein S11 		ENSMUST00000032840 (Mrps11-001) 78783119-78792989 protein_coding
ENSMUST00000123706 (Mrps11-003) 78783313-78791236 retained_intron
ENSMUST00000132922 (Mrps11-005) 78783371-78789305 retained_intron
ENSMUST00000133304 (Mrps11-004) 78783355-78789413 retained_intron
ENSMUST00000133553 (Mrps11-002) 78783359-78792987 processed_transcript
ENSMUST00000136001 (Mrps11-006) 78783370-78790923 processed_transcript
ENSMUSG00000030612 (Mrpl46)
mitochondrial ribosomal protein L46 		ENSMUST00000032841 (Mrpl46-001) 78775236-78783066 protein_coding
ENSMUST00000133949 (Mrpl46-002) 78775600-78783531 processed_transcript
ENSMUSG00000052629 (Gm9885)
predicted gene 9885 		ENSMUST00000064591 (Gm9885-201) 78578830-78581034 lincRNA
ENSMUST00000186234 (Gm9885-001) 78578830-78581038 lincRNA
ENSMUSG00000059146 (Ntrk3)
neurotrophic tyrosine kinase, receptor, type 3 		ENSMUST00000039431 (Ntrk3-001) 78192362-78578408 protein_coding
ENSMUST00000039438 (Ntrk3-002) 78302323-78577975 protein_coding
ENSMUST00000151885 (Ntrk3-004) 78302323-78377822 processed_transcript
ENSMUST00000155795 (Ntrk3-003) 78449625-78577975 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001AZ_0001ENSG00000140538ENST00000317501ENST00000355254ENST00000357724ENST00000360948ENST00000394480ENST00000540489ENST00000542733ENST00000557856ENST00000557897ENST00000558306ENST00000558576ENST00000558676ENST00000559067ENST00000559188ENST00000559680ENST00000559764ENST00000560017ENST00000560201ENST00000560739ENSG00000259183ENST00000558776ENSG00000259494ENST00000312475ENST00000558531ENST00000558660ENST00000559538ENST00000560703ENSG00000260305ENST00000569588CIL_0001AZ_0002ENSMUSG00000030611ENSMUST00000032840ENSMUST00000123706ENSMUST00000132922ENSMUST00000133304ENSMUST00000133553ENSMUST00000136001ENSMUSG00000030612ENSMUST00000032841ENSMUST00000133949ENSMUSG00000052629ENSMUST00000064591ENSMUST00000186234ENSMUSG00000059146ENSMUST00000039431ENSMUST00000039438ENSMUST00000151885ENSMUST00000155795
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001AZ_0001ENSG00000140538ENST00000317501ENST00000394480ENST00000540489ENST00000542733ENST00000557856ENST00000558676ENSG00000259183ENST00000558776ENSG00000259494ENST00000312475ENST00000558531ENST00000558660ENST00000560703ENSG00000260305ENST00000569588CIL_0001AZ_0002ENSMUSG00000030611ENSMUST00000032840ENSMUST00000123706ENSMUST00000133553ENSMUST00000136001ENSMUSG00000030612ENSMUST00000032841ENSMUSG00000052629ENSMUST00000064591ENSMUST00000186234ENSMUSG00000059146ENSMUST00000039431ENSMUST00000039438ENSMUST00000151885
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000140538 ENST00000317501 0.743±0.00 2.292±0.00 N/A 8.349±0.00 1.874±0.00 1.054±0.00 0.500±0.00 1.282±0.00 0.057±0.00 1.078±0.00 N/A 0.936±0.00 0.238±0.06 2.414±0.00
ENST00000355254 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000357724 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000360948 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000394480 N/A N/A 0.397±0.00 1.410±0.00 0.406±0.00 0.135±0.00 0.171±0.00 0.138±0.12 0.010±0.00 0.131±0.01 N/A 0.003±0.00 0.024±0.00 0.127±0.00
ENST00000540489 N/A N/A N/A N/A 0.214±0.00 N/A N/A N/A N/A N/A 0.376±0.00 N/A N/A 1.233±0.00
ENST00000542733 N/A N/A N/A N/A N/A N/A N/A 0.146±0.00 N/A N/A N/A N/A N/A 1.069±0.00
ENST00000557856 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.146±0.00 N/A
ENST00000557897 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558306 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558576 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558676 N/A N/A N/A N/A N/A 0.191±0.00 N/A N/A 0.065±0.00 0.256±0.00 N/A N/A 0.083±0.00 N/A
ENST00000559067 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559188 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559680 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559764 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560017 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560201 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560739 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000259183 ENST00000558776 N/A N/A N/A 0.207±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000259494 ENST00000312475 9.529±0.00 12.321±0.00 1.824±0.00 9.141±3.49 10.093±8.72 6.675±4.99 18.376±15.81 12.693±5.50 13.743±11.42 3.815±2.09 8.288±0.72 14.225±7.92 23.846±6.62 25.836±7.48
ENST00000558531 N/A N/A N/A N/A N/A 1.814±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558660 N/A N/A 0.393±0.00 0.395±0.00 N/A N/A 0.184±0.00 0.391±0.00 0.287±0.00 0.108±0.00 N/A 0.262±0.00 N/A N/A
ENST00000559538 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560703 N/A N/A N/A N/A N/A N/A N/A 12.052±0.00 9.864±0.00 N/A 5.188±0.00 N/A N/A N/A
ENSG00000260305 ENST00000569588 N/A N/A 0.070±0.00 N/A 0.034±0.00 0.171±0.00 N/A 0.022±0.00 0.035±0.00 0.048±0.00 N/A N/A N/A 1.912±0.57
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030611 ENSMUST00000032840 8.497±3.40 13.358±5.46 7.637±2.94 10.259±3.45 6.570±2.12 11.561±1.98 7.990±3.49 14.836±3.30 12.501±6.96 5.066±0.55 7.816±1.75 15.389±5.99 13.547±5.28 12.501±1.29
ENSMUST00000123706 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.783±0.00 N/A N/A
ENSMUST00000132922 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133304 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133553 5.625±1.29 21.292±0.00 5.983±1.00 11.110±1.03 5.003±1.00 8.912±0.00 N/A 8.017±0.89 9.042±4.16 4.953±0.00 6.790±1.91 16.484±5.70 9.871±3.26 7.228±1.72
ENSMUST00000136001 14.029±3.99 15.690±1.63 7.019±0.00 13.458±3.03 6.939±0.88 N/A 12.035±1.34 10.381±0.01 10.586±4.84 6.262±0.46 N/A 20.953±6.14 9.540±0.00 12.102±4.04
ENSMUSG00000030612 ENSMUST00000032841 10.638±1.25 29.092±2.36 9.617±0.75 13.784±2.74 11.141±2.79 20.225±4.88 18.021±2.55 25.055±1.96 19.279±5.31 12.320±1.24 13.034±0.36 17.733±2.26 31.222±17.84 9.725±0.77
ENSMUST00000133949 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000052629 ENSMUST00000064591 0.098±0.03 0.585±0.35 0.025±0.01 0.547±0.27 0.520±0.28 0.047±0.03 0.080±0.06 0.045±0.03 0.009±0.00 0.063±0.03 0.013±0.00 0.206±0.18 0.007±0.01 0.027±0.01
ENSMUST00000186234 0.097±0.03 0.039±0.00 0.025±0.01 0.713±0.45 0.105±0.05 0.023±0.01 0.020±0.00 0.027±0.01 0.009±0.00 0.063±0.03 0.013±0.00 0.109±0.06 0.003±0.00 0.019±0.01
ENSMUSG00000059146 ENSMUST00000039431 N/A 4.706±1.66 N/A N/A 4.058±0.00 0.203±0.11 0.236±0.00 0.927±0.00 0.041±0.02 0.712±0.02 0.120±0.01 2.390±0.51 0.058±0.02 0.079±0.00
ENSMUST00000039438 2.250±0.46 5.019±1.72 N/A 6.071±0.00 8.039±1.68 0.623±0.24 1.153±0.60 1.488±0.68 0.120±0.10 2.059±0.43 0.142±0.06 6.202±2.02 0.074±0.04 1.328±0.02
ENSMUST00000151885 N/A N/A N/A N/A N/A N/A N/A N/A 0.119±0.02 N/A N/A N/A N/A N/A
ENSMUST00000155795 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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