C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000473054 RP11-204K16.1-001 ENSG00000240210 9606 - 14:68338728-68339528 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000473054
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000473054 0.082±0.00 0.132±0.00 0.072±0.00 0.093±0.00 0.064±0.00 0.020±0.00 0.045±0.00 0.059±0.00 0.043±0.00 0.134±0.00 0.029±0.00 0.119±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002CJ CIL_0002CJ_0001 CGP 14:67727374-68730218
CIL_0001JV CIL_0001JV_0002 CGP 14:67819779-68796253
CIL_00083I CIL_00083I_0001 VISTA 14:67838982-68441740
CIL_00086O CIL_00086O_0001 VISTA 14:67868126-68469343
CIL_0008U1 CIL_0008U1_0001 VISTA 14:68076040-68679058
CIL_0008VV CIL_0008VV_0001 VISTA 14:68209687-68812666

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000085365 Gm16477-001 processed_pseudogene Mus_musculus 0 760
ENSMUST00000118791 Rpl7a-ps11-001 processed_pseudogene Mus_musculus 0 743
ENSMUST00000090170 Rpl7a-ps3-201 protein_coding Mus_musculus 0 743
ENSMUST00000190511 RP23-58N8.1-001 processed_pseudogene Mus_musculus 0 737
ENSMUST00000102898 Rpl7a-001 protein_coding Mus_musculus 0 732
ENSMUST00000094754 Rpl7a-ps8-201 protein_coding Mus_musculus 0 732
ENSMUST00000120676 Gm12712-001 processed_pseudogene Mus_musculus 0 726
ENSMUST00000183380 Gm17828-001 processed_pseudogene Mus_musculus 0 721
ENSMUST00000095218 Rpl7a-ps5-201 protein_coding Mus_musculus 0 721
ENSMUST00000191231 RP24-217I2.2-001 processed_pseudogene Mus_musculus 0 719
ENSMUST00000190579 Rpl7a-ps10-001 processed_pseudogene Mus_musculus 0 710
ENSMUST00000096427 Gm17415-001 processed_pseudogene Mus_musculus 0 708
ENSMUST00000071172 RP23-58N8.4-001 processed_pseudogene Mus_musculus 0 701
ENSMUST00000145247 Gm6286-001 processed_pseudogene Mus_musculus 0 699
ENSMUST00000120032 Gm13666-001 processed_pseudogene Mus_musculus 0 697
ENSMUST00000119745 Gm13864-001 processed_pseudogene Mus_musculus 0 684
ENSMUST00000071565 Gm4978-201 protein_coding Mus_musculus 0 684
ENSMUST00000162120 Gm7418-001 processed_pseudogene Mus_musculus 0 676
ENSMUST00000189720 RP23-321G17.2-001 processed_pseudogene Mus_musculus 0 669
ENSMUST00000161633 Gm5766-001 transcribed_processed_pseudogene Mus_musculus 0 667
ENSMUST00000160520 Gm5766-002 processed_transcript Mus_musculus 0 667
ENSMUST00000119589 Gm16071-001 processed_pseudogene Mus_musculus 0 667
ENSMUST00000104977 Gm4877-201 protein_coding Mus_musculus 0 662
ENSMUST00000120384 Rpl7a-ps12-001 processed_pseudogene Mus_musculus 0 658
ENSMUST00000118638 Gm13039-001 processed_pseudogene Mus_musculus 0 652
ENSMUST00000185999 RP23-16N14.6-001 processed_pseudogene Mus_musculus 0 652
ENSMUST00000151645 Gm7847-001 processed_pseudogene Mus_musculus 0 645
ENSMUST00000184700 Gm7863-001 processed_pseudogene Mus_musculus 0 641
ENSMUST00000117398 Gm8250-001 processed_pseudogene Mus_musculus 0 636
ENSMUST00000121278 Gm13726-001 processed_pseudogene Mus_musculus 0 636
ENSMUST00000136269 Rpl7a-002 processed_transcript Mus_musculus 0 617
ENSMUST00000171235 Gm5459-001 processed_pseudogene Mus_musculus 0 616
ENSMUST00000118749 Gm4909-001 processed_pseudogene Mus_musculus 0 616
ENSMUST00000122355 Gm11760-001 processed_pseudogene Mus_musculus 0 614
ENSMUST00000121823 Gm5257-001 processed_pseudogene Mus_musculus 0 614
ENSMUST00000119629 Gm11979-001 processed_pseudogene Mus_musculus 0 608
ENSMUST00000119952 Gm15836-001 processed_pseudogene Mus_musculus 0 597
ENSMUST00000117240 Gm11989-001 processed_pseudogene Mus_musculus 0 595
ENSMUST00000165944 RP24-170M24.1-001 processed_pseudogene Mus_musculus 0 588
ENSMUST00000137376 Rpl7a-004 processed_transcript Mus_musculus 0 579
ENSMUST00000117439 Gm12385-001 processed_pseudogene Mus_musculus 0 577
ENSMUST00000122273 Gm12269-001 processed_pseudogene Mus_musculus 0 562
ENSMUST00000118291 Gm16166-001 processed_pseudogene Mus_musculus 0 558
ENSMUST00000171395 Gm8425-001 processed_pseudogene Mus_musculus 0 555
ENSMUST00000118838 Gm11362-001 processed_pseudogene Mus_musculus 0 538
ENSMUST00000185009 Gm14214-001 translated_processed_pseudogene Mus_musculus 0 536
ENSMUST00000118766 Gm16198-001 processed_pseudogene Mus_musculus 0 523
ENSMUST00000139800 Gm5353-001 processed_pseudogene Mus_musculus 0 521
ENSMUST00000120236 Gm14141-001 processed_pseudogene Mus_musculus 0 516
ENSMUST00000184654 Gm14214-002 protein_coding Mus_musculus 0 510
ENSMUST00000117118 Rpl7a-ps9-001 processed_pseudogene Mus_musculus 0 505
ENSMUST00000187766 RP23-223O13.2-001 processed_pseudogene Mus_musculus 0 503
ENSMUST00000188170 RP23-248N10.1-001 processed_pseudogene Mus_musculus 0 503
ENSMUST00000121692 Rpl7a-ps13-001 processed_pseudogene Mus_musculus 0 496
ENSMUST00000117827 Gm15515-001 processed_pseudogene Mus_musculus 0 492
ENSMUST00000121538 Gm14156-001 processed_pseudogene Mus_musculus 0 451
ENSMUST00000160362 Gm2976-001 processed_pseudogene Mus_musculus 0 438
ENSMUST00000118582 Gm14082-001 processed_pseudogene Mus_musculus 0 424
ENSMUST00000143678 Rpl7a-003 processed_transcript Mus_musculus 0 399
ENSMUST00000172650 Gm7393-001 processed_pseudogene Mus_musculus 0 335
ENSMUST00000117289 Gm16394-001 processed_pseudogene Mus_musculus 0 283
ENSMUST00000118567 Gm14836-001 processed_pseudogene Mus_musculus 0 231
ENSMUST00000177515 Gm20660-001 processed_pseudogene Mus_musculus 5.60519e-45 185
ENSMUST00000117903 Gm8097-001 processed_pseudogene Mus_musculus 1.96182e-44 183
ENSMUST00000119048 Gm15041-001 processed_pseudogene Mus_musculus 2e-29 134

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