C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001ZA_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000079257-ENSG00000118849 CGP 9606 3:158645822-158732696
GeneTranscriptPositionBiotype
ENSG00000079257 (LXN)
latexin 		ENST00000264265 (LXN-001) 158666414-158672693 protein_coding
ENST00000482640 (LXN-002) 158645822-158669593 protein_coding
ENSG00000118849 (RARRES1)
retinoic acid receptor responder (tazarotene induced) 1 		ENST00000237696 (RARRES1-001) 158696892-158732696 protein_coding
ENST00000462663 (RARRES1-005) 158698121-158710872 processed_transcript
ENST00000471444 (RARRES1-004) 158704791-158705708 processed_transcript
ENST00000479756 (RARRES1-002) 158704651-158732442 protein_coding
ENST00000498640 (RARRES1-003) 158704809-158732489 processed_transcript
ENSG00000118855 (MFSD1)
major facilitator superfamily domain containing 1 		ENST00000264266 (MFSD1-018) 158802091-158829116 protein_coding
ENST00000392813 (MFSD1-201) 158801926-158829718 protein_coding
ENST00000415822 (MFSD1-001) 158801865-158829719 protein_coding
ENST00000465235 (MFSD1-006) 158822443-158829718 retained_intron
ENST00000465624 (MFSD1-016) 158819547-158829163 retained_intron
ENST00000465739 (MFSD1-012) 158747577-158805474 protein_coding
ENST00000468409 (MFSD1-017) 158823194-158824476 retained_intron
ENST00000471266 (MFSD1-007) 158802137-158809261 nonsense_mediated_decay
ENST00000471500 (MFSD1-005) 158802156-158829715 nonsense_mediated_decay
ENST00000474670 (MFSD1-008) 158802379-158813981 protein_coding
ENST00000476860 (MFSD1-010) 158804231-158809273 retained_intron
ENST00000477743 (MFSD1-015) 158809237-158823486 protein_coding
ENST00000480292 (MFSD1-003) 158802057-158829716 nonsense_mediated_decay
ENST00000482835 (MFSD1-009) 158802486-158807440 protein_coding
ENST00000484166 (MFSD1-002) 158802051-158829716 nonsense_mediated_decay
ENST00000486568 (MFSD1-013) 158732198-158807421 protein_coding
ENST00000489639 (MFSD1-014) 158809002-158819706 retained_intron
ENST00000491804 (MFSD1-011) 158732357-158804371 protein_coding
ENST00000622669 (MFSD1-202) 158801926-158829718 protein_coding
ENSG00000168827 (GFM1)
G elongation factor, mitochondrial 1 		ENST00000264263 (GFM1-004) 158644597-158692569 protein_coding
ENST00000312756 (GFM1-006) 158652198-158657518 retained_intron
ENST00000464732 (GFM1-007) 158644705-158646781 protein_coding
ENST00000472383 (GFM1-010) 158684631-158691899 protein_coding
ENST00000477721 (GFM1-011) 158681988-158690586 retained_intron
ENST00000478251 (GFM1-005) 158646888-158651020 retained_intron
ENST00000478254 (GFM1-003) 158644528-158692572 nonsense_mediated_decay
ENST00000478576 (GFM1-002) 158644528-158682433 protein_coding
ENST00000481468 (GFM1-009) 158682107-158685314 retained_intron
ENST00000486715 (GFM1-001) 158644278-158692575 protein_coding
ENST00000490261 (GFM1-008) 158660264-158665407 processed_transcript
ENSG00000240207 (RP11-379F4.4)
 ENST00000465477 (RP11-379F4.4-004) 158732327-158784070 antisense
ENST00000468242 (RP11-379F4.4-003) 158732378-158771089 antisense
ENST00000477589 (RP11-379F4.4-001) 158740417-158743592 antisense
ENST00000495318 (RP11-379F4.4-005) 158732263-158737062 antisense
ENST00000496842 (RP11-379F4.4-002) 158740426-158743336 antisense
ENST00000607426 (RP11-379F4.4-006) 158735721-158737905 antisense
ENSG00000272087 (RP11-379F4.7)
 ENST00000607624 (RP11-379F4.7-001) 158693120-158693768 lincRNA
ENSG00000272440 (RP11-379F4.6)
 ENST00000606185 (RP11-379F4.6-001) 158695367-158695581 lincRNA
CIL_0001ZA_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000047557-ENSMUSG00000049404 CGP 10090 3:67457998-67515523
GeneTranscriptPositionBiotype
ENSMUSG00000027774 (Gfm1)
G elongation factor, mitochondrial 1 		ENSMUST00000077271 (Gfm1-001) 67430096-67476529 protein_coding
ENSMUST00000160529 (Gfm1-003) 67456479-67474804 retained_intron
ENSMUST00000161009 (Gfm1-002) 67430116-67458805 protein_coding
ENSMUSG00000047557 (Lxn)
latexin 		ENSMUST00000058981 (Lxn-001) 67457998-67463926 protein_coding
ENSMUST00000160202 (Lxn-002) 67461061-67463782 retained_intron
ENSMUST00000160827 (Lxn-003) 67458001-67461634 retained_intron
ENSMUSG00000049404 (Rarres1)
retinoic acid receptor responder (tazarotene induced) 1 		ENSMUST00000054825 (Rarres1-001) 67478972-67515523 protein_coding
ENSMUST00000178314 (Rarres1-201) 67478886-67515523 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001ZA_0001ENSG00000079257ENST00000264265ENST00000482640ENSG00000118849ENST00000237696ENST00000462663ENST00000471444ENST00000479756ENST00000498640ENSG00000118855ENST00000264266ENST00000392813ENST00000415822ENST00000465235ENST00000465624ENST00000465739ENST00000468409ENST00000471266ENST00000471500ENST00000474670ENST00000476860ENST00000477743ENST00000480292ENST00000482835ENST00000484166ENST00000486568ENST00000489639ENST00000491804ENST00000622669ENSG00000168827ENST00000264263ENST00000312756ENST00000464732ENST00000472383ENST00000477721ENST00000478251ENST00000478254ENST00000478576ENST00000481468ENST00000486715ENST00000490261ENSG00000240207ENST00000465477ENST00000468242ENST00000477589ENST00000495318ENST00000496842ENST00000607426ENSG00000272087ENST00000607624ENSG00000272440ENST00000606185CIL_0001ZA_0002ENSMUSG00000027774ENSMUST00000077271ENSMUST00000160529ENSMUST00000161009ENSMUSG00000047557ENSMUST00000058981ENSMUST00000160202ENSMUST00000160827ENSMUSG00000049404ENSMUST00000054825ENSMUST00000178314
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001ZA_0001ENSG00000079257ENST00000264265ENSG00000118849ENST00000237696ENSG00000118855ENST00000264266ENST00000392813ENST00000465235ENST00000471266ENST00000471500ENST00000476860ENST00000484166ENST00000622669ENSG00000168827ENST00000264263ENST00000478254ENST00000486715ENSG00000240207ENST00000465477ENST00000607426ENSG00000272087ENST00000607624ENSG00000272440ENST00000606185CIL_0001ZA_0002ENSMUSG00000027774ENSMUST00000077271ENSMUST00000160529ENSMUST00000161009ENSMUSG00000047557ENSMUST00000058981ENSMUST00000160827ENSMUSG00000049404ENSMUST00000054825ENSMUST00000178314
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000079257 ENST00000264265 9.638±0.00 11.430±0.00 N/A N/A 6.917±1.22 7.713±2.07 N/A 10.047±0.00 2.847±0.00 15.620±0.00 N/A 12.628±6.62 7.516±3.01 N/A
ENST00000482640 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000118849 ENST00000237696 10.218±0.00 25.993±0.00 N/A N/A 3.971±0.00 28.316±0.00 N/A N/A N/A 3.127±0.00 0.426±0.21 24.396±19.11 N/A 14.433±0.00
ENST00000462663 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471444 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479756 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498640 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000118855 ENST00000264266 N/A N/A 4.412±0.00 N/A 4.404±0.00 5.268±0.00 N/A 5.730±0.00 7.141±0.00 7.227±0.00 1.412±0.00 N/A N/A N/A
ENST00000392813 N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.812±0.00 N/A N/A N/A N/A
ENST00000415822 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465235 N/A N/A 2.148±0.00 N/A 2.907±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465624 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465739 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468409 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471266 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 17.008±0.00 49.981±0.00 N/A
ENST00000471500 10.216±0.00 N/A N/A 5.113±0.00 14.748±0.00 2.893±0.00 7.813±0.00 19.739±0.00 11.568±0.00 4.459±0.00 1.185±0.00 10.226±2.35 12.780±0.26 7.627±0.45
ENST00000474670 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476860 N/A N/A N/A 12.783±0.00 20.843±0.00 15.971±0.00 4.280±0.00 13.519±0.00 25.968±0.00 28.748±0.00 4.143±0.00 N/A N/A N/A
ENST00000477743 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480292 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482835 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484166 10.458±0.00 15.009±0.00 N/A 3.471±1.01 11.305±0.00 10.627±0.00 3.487±2.90 8.251±4.84 6.507±0.00 7.538±0.26 0.225±0.00 N/A N/A 6.821±0.00
ENST00000486568 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489639 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491804 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000622669 N/A N/A N/A 1.342±0.00 5.937±0.00 2.345±0.00 0.451±0.00 N/A N/A N/A 0.941±0.00 8.302±0.00 10.149±1.61 N/A
ENSG00000168827 ENST00000264263 3.979±0.00 6.637±0.00 3.671±0.00 3.588±2.21 6.559±0.00 4.607±0.00 7.766±0.00 9.053±0.00 4.330±1.48 5.818±0.00 6.323±0.00 2.385±1.10 4.113±1.86 5.290±3.03
ENST00000312756 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464732 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472383 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477721 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478251 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478254 3.673±0.00 3.634±0.00 N/A 5.104±0.00 2.589±0.00 N/A 5.051±0.00 1.832±0.00 5.718±0.00 2.096±0.00 2.970±1.78 3.197±0.00 2.783±1.32 6.793±0.00
ENST00000478576 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481468 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486715 2.631±0.00 N/A N/A 6.408±0.00 9.373±0.00 3.259±1.52 4.607±0.00 3.897±0.04 1.622±0.00 2.583±0.00 3.643±0.00 6.168±0.39 5.325±3.27 10.384±0.00
ENST00000490261 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000240207 ENST00000465477 N/A N/A N/A 3.878±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468242 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477589 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495318 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496842 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000607426 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.220±0.00 N/A N/A 3.924±0.00
ENSG00000272087 ENST00000607624 0.808±0.00 1.390±0.00 N/A 0.467±0.18 1.575±0.47 3.143±1.39 0.839±0.40 1.475±0.06 1.021±0.31 0.575±0.00 1.199±0.61 1.758±2.16 0.310±0.12 0.952±0.61
ENSG00000272440 ENST00000606185 0.840±0.00 0.578±0.00 N/A 0.598±0.00 0.426±0.00 0.445±0.00 0.764±0.00 0.177±0.00 0.504±0.00 0.230±0.00 0.301±0.00 3.833±3.59 N/A 0.479±0.21
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027774 ENSMUST00000077271 3.492±0.31 N/A 3.149±0.41 4.807±1.32 3.258±0.94 N/A 11.995±0.46 6.120±0.78 4.201±1.03 3.183±0.22 14.582±1.16 3.549±1.42 5.220±1.81 1.373±0.23
ENSMUST00000160529 N/A N/A N/A N/A 11.557±2.73 N/A 22.214±1.38 11.942±0.66 13.103±2.61 N/A 14.234±0.80 9.925±0.60 9.656±4.75 N/A
ENSMUST00000161009 8.703±0.41 29.806±8.80 N/A 4.502±0.57 9.551±2.58 11.461±1.46 20.791±1.77 15.675±1.48 14.463±3.49 7.884±1.40 13.519±1.07 11.244±1.56 9.888±6.92 4.416±0.28
ENSMUSG00000047557 ENSMUST00000058981 16.453±2.89 44.429±3.54 14.121±1.48 24.476±7.17 22.806±10.07 35.505±9.87 N/A 15.455±1.97 3.971±0.00 55.825±10.88 N/A 25.924±9.78 19.688±9.36 9.940±4.20
ENSMUST00000160202 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160827 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.262±0.00 5.911±0.00 N/A
ENSMUSG00000049404 ENSMUST00000054825 1.173±0.47 N/A 0.351±0.12 0.209±0.16 1.796±0.52 1.370±0.14 0.359±0.05 0.855±0.49 6.358±6.05 0.759±0.43 0.326±0.14 0.260±0.17 0.851±0.45 2.123±0.70
ENSMUST00000178314 N/A 2.279±1.05 N/A 0.299±0.00 1.816±0.61 1.093±0.17 N/A 0.700±0.35 4.114±5.22 0.653±0.64 0.189±0.12 0.256±0.11 0.980±0.57 0.825±0.12

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