C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 12513
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000118617 Gm12513-001 ENSMUSG00000084404 10090 - 4:55408956-55409307 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastOvaryTestisENSMUST00000118617
Transcript ID Adipose Bladder Breast Ovary Testis
ENSMUST00000118617 0.207±0.00 0.047±0.00 0.419±0.21 0.411±0.22 0.183±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000225 CIL_000225_0003 CGP 4:55350043-55532466

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000230495 H3F3AP6-001 processed_pseudogene Homo_sapiens 0 311
ENST00000321285 RP11-402J6.3-001 processed_pseudogene Homo_sapiens 0 285
ENST00000366813 H3F3A-002 protein_coding Homo_sapiens 0 316
ENST00000366814 H3F3A-003 protein_coding Homo_sapiens 0 316
ENST00000366815 H3F3A-001 protein_coding Homo_sapiens 0 316
ENST00000366816 H3F3A-004 protein_coding Homo_sapiens 0 316
ENST00000369387 H3F3AP4-001 processed_pseudogene Homo_sapiens 0 316
ENST00000404612 HIST1H3PS1-001 processed_pseudogene Homo_sapiens 0 265
ENST00000416267 RP11-349N19.2-001 processed_pseudogene Homo_sapiens 0 292
ENST00000416765 RP1-22N22.1-001 processed_pseudogene Homo_sapiens 0 248
ENST00000421430 RP11-4M23.4-001 processed_pseudogene Homo_sapiens 0 231

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