C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000256_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000154710-ENSG00000106609 CGP 9606 7:66682164-66958551
GeneTranscriptPositionBiotype
ENSG00000106609 (TMEM248)
transmembrane protein 248 		ENST00000341567 (TMEM248-001) 66921225-66958551 protein_coding
ENST00000413593 (TMEM248-003) 66921844-66945032 protein_coding
ENST00000418375 (TMEM248-005) 66930624-66945098 protein_coding
ENST00000424964 (TMEM248-004) 66930615-66945234 protein_coding
ENST00000433271 (TMEM248-002) 66921262-66956153 nonsense_mediated_decay
ENST00000484751 (TMEM248-006) 66945058-66951335 retained_intron
ENST00000607045 (TMEM248-008) 66921232-66945160 protein_coding
ENSG00000179131 (RP11-458F8.3)
 ENST00000427776 (RP11-458F8.3-001) 66914581-66914943 processed_pseudogene
ENSG00000230295 (RP11-458F8.2)
 ENST00000423746 (RP11-458F8.2-001) 66880708-66882981 unprocessed_pseudogene
ENSG00000232546 (RP11-458F8.1)
 ENST00000419595 (RP11-458F8.1-001) 66848496-66858136 unprocessed_pseudogene
ENSG00000243335 (KCTD7)
potassium channel tetramerization domain containing 7 		ENST00000275532 (KCTD7-001) 66628881-66643051 protein_coding
ENST00000443322 (KCTD7-002) 66628943-66640565 protein_coding
ENST00000449064 (KCTD7-003) 66628958-66638929 protein_coding
ENST00000503687 (KCTD7-004) 66628958-66811187 nonsense_mediated_decay
ENSG00000271064 (RP11-792A8.3)
 ENST00000603786 (RP11-792A8.3-001) 66748838-66749077 processed_pseudogene
ENSG00000272831 (RP11-792A8.4)
 ENST00000607978 (RP11-792A8.4-001) 66739829-66740385 antisense
ENSG00000273142 (RP11-458F8.4)
 ENST00000610177 (RP11-458F8.4-001) 66902857-66906297 lincRNA
ENSG00000274135 (Metazoa_SRP)
Metazoan signal recognition particle RNA 		ENST00000570437 (Metazoa_SRP.1-269) 66915063-66915334 misc_RNA
CIL_000256_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000025340-ENSMUSG00000053094 CGP 10090 5:130171798-130243765
GeneTranscriptPositionBiotype
ENSMUSG00000025340 (Rabgef1)
RAB guanine nucleotide exchange factor (GEF) 1 		ENSMUST00000026390 (Rabgef1-002) 130187161-130214337 protein_coding
ENSMUST00000119027 (Rabgef1-004) 130187161-130208752 protein_coding
ENSMUST00000119797 (Rabgef1-001) 130171798-130214342 protein_coding
ENSMUST00000125937 (Rabgef1-006) 130207053-130210991 retained_intron
ENSMUST00000143727 (Rabgef1-005) 130187220-130191321 retained_intron
ENSMUST00000143865 (Rabgef1-008) 130213166-130214050 nonsense_mediated_decay
ENSMUST00000147493 (Rabgef1-007) 130211381-130212975 retained_intron
ENSMUST00000148264 (Rabgef1-003) 130171824-130210442 protein_coding
ENSMUSG00000053094 (Tmem248)
transmembrane protein 248 		ENSMUST00000065329 (Tmem248-201) 130219744-130243765 protein_coding
ENSMUST00000111298 (Tmem248-202) 130222335-130243765 protein_coding
ENSMUSG00000080893 (Gm15920)
predicted gene 15920 		ENSMUST00000118998 (Gm15920-001) 130188395-130188796 processed_pseudogene
ENSMUSG00000094092 (Gm15921)
predicted gene 15921 		ENSMUST00000119542 (Gm15921-001) 130208080-130208562 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000256_0001ENSG00000106609ENST00000341567ENST00000413593ENST00000418375ENST00000424964ENST00000433271ENST00000484751ENST00000607045ENSG00000179131ENST00000427776ENSG00000230295ENST00000423746ENSG00000232546ENST00000419595ENSG00000243335ENST00000275532ENST00000443322ENST00000449064ENST00000503687ENSG00000271064ENST00000603786ENSG00000272831ENST00000607978ENSG00000273142ENST00000610177ENSG00000274135ENST00000570437CIL_000256_0002ENSMUSG00000025340ENSMUST00000026390ENSMUST00000119027ENSMUST00000119797ENSMUST00000125937ENSMUST00000143727ENSMUST00000143865ENSMUST00000147493ENSMUST00000148264ENSMUSG00000053094ENSMUST00000065329ENSMUST00000111298ENSMUSG00000080893ENSMUST00000118998ENSMUSG00000094092ENSMUST00000119542
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000256_0001ENSG00000106609ENST00000341567ENST00000433271ENSG00000179131ENST00000427776ENSG00000230295ENST00000423746ENSG00000232546ENST00000419595ENSG00000243335ENST00000275532ENSG00000271064ENST00000603786ENSG00000272831ENST00000607978ENSG00000273142ENST00000610177ENSG00000274135ENST00000570437CIL_000256_0002ENSMUSG00000025340ENSMUST00000026390ENSMUST00000119797ENSMUST00000147493ENSMUST00000148264ENSMUSG00000053094ENSMUST00000065329ENSMUST00000111298ENSMUSG00000080893ENSMUST00000118998ENSMUSG00000094092ENSMUST00000119542
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000106609 ENST00000341567 24.639±0.00 28.467±0.00 N/A 18.300±0.00 12.890±9.57 16.473±2.29 5.588±4.41 19.572±0.00 7.532±6.18 15.397±1.40 7.960±0.00 26.216±9.10 13.235±2.02 25.608±9.95
ENST00000413593 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000418375 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000424964 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000433271 N/A N/A N/A N/A N/A N/A 4.150±0.00 N/A 5.814±0.00 17.288±0.00 5.875±1.38 N/A 12.184±1.04 11.968±0.00
ENST00000484751 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000607045 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000179131 ENST00000427776 N/A 0.215±0.00 N/A 0.089±0.00 0.576±0.53 N/A N/A N/A N/A N/A 0.113±0.00 0.849±0.00 N/A 0.060±0.02
ENSG00000230295 ENST00000423746 0.036±0.00 0.608±0.00 N/A 0.398±0.00 0.138±0.00 0.032±0.00 0.235±0.00 0.244±0.00 0.124±0.00 N/A 0.510±0.00 0.422±0.00 N/A 0.706±0.00
ENSG00000232546 ENST00000419595 0.038±0.00 N/A N/A N/A N/A N/A 0.102±0.00 0.145±0.00 N/A 0.065±0.00 N/A 0.339±0.00 N/A 0.266±0.20
ENSG00000243335 ENST00000275532 1.473±0.00 3.076±0.00 N/A 3.592±0.79 1.542±0.54 1.982±0.00 0.733±0.15 0.515±0.00 2.241±0.00 1.927±0.25 0.970±0.00 5.259±2.49 2.089±0.02 6.655±0.31
ENST00000443322 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000449064 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503687 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000271064 ENST00000603786 0.393±0.00 1.173±0.00 5.767±0.00 N/A 3.281±0.00 N/A N/A N/A 2.754±0.00 N/A N/A 0.257±0.00 N/A 0.076±0.00
ENSG00000272831 ENST00000607978 N/A N/A N/A N/A 14.172±0.00 20.239±0.00 N/A 4.560±0.00 5.861±0.00 11.134±0.00 N/A N/A N/A N/A
ENSG00000273142 ENST00000610177 0.808±0.00 2.637±0.00 N/A 0.585±0.00 1.065±0.00 0.267±0.06 0.543±0.00 1.046±0.00 0.705±0.00 1.849±0.00 0.461±0.13 2.359±0.49 0.479±0.06 8.361±4.87
ENSG00000274135 ENST00000570437 0.368±0.00 0.391±0.00 0.628±0.00 0.283±0.00 N/A 0.122±0.00 0.260±0.07 0.069±0.00 0.060±0.00 N/A 0.179±0.00 1.020±0.49 0.226±0.00 0.415±0.36
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025340 ENSMUST00000026390 N/A 4.992±0.42 N/A N/A 4.294±1.94 5.219±0.27 N/A N/A 0.771±0.00 N/A N/A 4.872±1.05 N/A N/A
ENSMUST00000119027 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000119797 3.467±0.26 1.647±0.00 14.219±3.44 3.720±1.00 4.016±1.85 5.812±0.16 3.680±1.51 4.338±0.97 6.634±2.45 9.066±1.66 16.913±3.44 3.698±1.16 7.076±3.12 2.402±0.51
ENSMUST00000125937 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143727 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143865 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147493 3.592±0.91 9.888±2.37 N/A 3.418±0.00 5.708±1.06 7.768±1.35 2.966±0.00 3.320±0.00 2.267±0.31 5.478±1.07 N/A 7.371±2.56 N/A 1.340±0.09
ENSMUST00000148264 N/A N/A N/A 8.469±0.00 N/A N/A N/A N/A N/A N/A N/A 15.748±0.00 14.097±4.84 1.248±0.00
ENSMUSG00000053094 ENSMUST00000065329 N/A N/A N/A N/A N/A N/A N/A N/A 2.462±0.08 N/A N/A 12.890±1.36 13.519±8.05 N/A
ENSMUST00000111298 17.137±1.35 41.709±0.90 15.554±0.80 9.179±2.23 16.291±7.31 26.745±1.30 7.513±3.35 14.934±2.29 15.234±3.64 29.864±3.53 9.766±2.51 25.680±10.29 17.615±7.62 15.963±6.30
ENSMUSG00000080893 ENSMUST00000118998 20.106±4.17 5.361±1.25 1.211±0.61 2.008±0.69 8.869±2.50 6.013±2.13 35.440±2.58 25.214±7.91 4.781±4.62 5.503±2.55 1.115±0.83 8.209±6.43 11.929±15.48 15.227±5.17
ENSMUSG00000094092 ENSMUST00000119542 0.467±0.00 0.756±0.06 0.871±0.00 0.540±0.00 0.717±0.18 1.066±0.00 0.170±0.05 0.205±0.07 0.322±0.10 0.849±0.28 0.086±0.02 1.073±0.58 0.292±0.17 0.176±0.06

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