C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000256_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000154710-ENSG00000106609 CGP 9606 7:66682164-66958551
GeneTranscriptPositionBiotype
ENSG00000106609 (TMEM248)
transmembrane protein 248 		ENST00000341567 (TMEM248-001) 66921225-66958551 protein_coding
ENST00000413593 (TMEM248-003) 66921844-66945032 protein_coding
ENST00000418375 (TMEM248-005) 66930624-66945098 protein_coding
ENST00000424964 (TMEM248-004) 66930615-66945234 protein_coding
ENST00000433271 (TMEM248-002) 66921262-66956153 nonsense_mediated_decay
ENST00000484751 (TMEM248-006) 66945058-66951335 retained_intron
ENST00000607045 (TMEM248-008) 66921232-66945160 protein_coding
ENSG00000179131 (RP11-458F8.3)
 ENST00000427776 (RP11-458F8.3-001) 66914581-66914943 processed_pseudogene
ENSG00000230295 (RP11-458F8.2)
 ENST00000423746 (RP11-458F8.2-001) 66880708-66882981 unprocessed_pseudogene
ENSG00000232546 (RP11-458F8.1)
 ENST00000419595 (RP11-458F8.1-001) 66848496-66858136 unprocessed_pseudogene
ENSG00000243335 (KCTD7)
potassium channel tetramerization domain containing 7 		ENST00000275532 (KCTD7-001) 66628881-66643051 protein_coding
ENST00000443322 (KCTD7-002) 66628943-66640565 protein_coding
ENST00000449064 (KCTD7-003) 66628958-66638929 protein_coding
ENST00000503687 (KCTD7-004) 66628958-66811187 nonsense_mediated_decay
ENSG00000271064 (RP11-792A8.3)
 ENST00000603786 (RP11-792A8.3-001) 66748838-66749077 processed_pseudogene
ENSG00000272831 (RP11-792A8.4)
 ENST00000607978 (RP11-792A8.4-001) 66739829-66740385 antisense
ENSG00000273142 (RP11-458F8.4)
 ENST00000610177 (RP11-458F8.4-001) 66902857-66906297 lincRNA
ENSG00000274135 (Metazoa_SRP)
Metazoan signal recognition particle RNA 		ENST00000570437 (Metazoa_SRP.1-269) 66915063-66915334 misc_RNA

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_000256_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000025340-ENSMUSG00000053094 CGP 10090 5:130171798-130243765
GeneTranscriptPositionBiotype
ENSMUSG00000025340 (Rabgef1)
RAB guanine nucleotide exchange factor (GEF) 1 		ENSMUST00000026390 (Rabgef1-002) 130187161-130214337 protein_coding
ENSMUST00000119027 (Rabgef1-004) 130187161-130208752 protein_coding
ENSMUST00000119797 (Rabgef1-001) 130171798-130214342 protein_coding
ENSMUST00000125937 (Rabgef1-006) 130207053-130210991 retained_intron
ENSMUST00000143727 (Rabgef1-005) 130187220-130191321 retained_intron
ENSMUST00000143865 (Rabgef1-008) 130213166-130214050 nonsense_mediated_decay
ENSMUST00000147493 (Rabgef1-007) 130211381-130212975 retained_intron
ENSMUST00000148264 (Rabgef1-003) 130171824-130210442 protein_coding
ENSMUSG00000053094 (Tmem248)
transmembrane protein 248 		ENSMUST00000065329 (Tmem248-201) 130219744-130243765 protein_coding
ENSMUST00000111298 (Tmem248-202) 130222335-130243765 protein_coding
ENSMUSG00000080893 (Gm15920)
predicted gene 15920 		ENSMUST00000118998 (Gm15920-001) 130188395-130188796 processed_pseudogene
ENSMUSG00000094092 (Gm15921)
predicted gene 15921 		ENSMUST00000119542 (Gm15921-001) 130208080-130208562 processed_pseudogene

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000256_0001ENSG00000106609ENST00000341567ENST00000413593ENST00000418375ENST00000424964ENST00000433271ENST00000484751ENST00000607045ENSG00000179131ENST00000427776ENSG00000230295ENST00000423746ENSG00000232546ENST00000419595ENSG00000243335ENST00000275532ENST00000443322ENST00000449064ENST00000503687ENSG00000271064ENST00000603786ENSG00000272831ENST00000607978ENSG00000273142ENST00000610177ENSG00000274135ENST00000570437CIL_000256_0002ENSMUSG00000025340ENSMUST00000026390ENSMUST00000119027ENSMUST00000119797ENSMUST00000125937ENSMUST00000143727ENSMUST00000143865ENSMUST00000147493ENSMUST00000148264ENSMUSG00000053094ENSMUST00000065329ENSMUST00000111298ENSMUSG00000080893ENSMUST00000118998ENSMUSG00000094092ENSMUST00000119542
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000256_0001ENSG00000106609ENST00000341567ENST00000433271ENSG00000179131ENST00000427776ENSG00000230295ENST00000423746ENSG00000232546ENST00000419595ENSG00000243335ENST00000275532ENSG00000271064ENST00000603786ENSG00000272831ENST00000607978ENSG00000273142ENST00000610177ENSG00000274135ENST00000570437CIL_000256_0002ENSMUSG00000025340ENSMUST00000026390ENSMUST00000119797ENSMUST00000147493ENSMUST00000148264ENSMUSG00000053094ENSMUST00000065329ENSMUST00000111298ENSMUSG00000080893ENSMUST00000118998ENSMUSG00000094092ENSMUST00000119542
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000106609 ENST00000341567 24.639±0.00 28.467±0.00 N/A 18.300±0.00 12.890±9.57 16.473±2.29 5.588±4.41 19.572±0.00 7.532±6.18 15.397±1.40 7.960±0.00 26.216±9.10 13.235±2.02 25.608±9.95
ENST00000413593 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000418375 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000424964 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000433271 N/A N/A N/A N/A N/A N/A 4.150±0.00 N/A 5.814±0.00 17.288±0.00 5.875±1.38 N/A 12.184±1.04 11.968±0.00
ENST00000484751 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000607045 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000179131 ENST00000427776 N/A 0.215±0.00 N/A 0.089±0.00 0.576±0.53 N/A N/A N/A N/A N/A 0.113±0.00 0.849±0.00 N/A 0.060±0.02
ENSG00000230295 ENST00000423746 0.036±0.00 0.608±0.00 N/A 0.398±0.00 0.138±0.00 0.032±0.00 0.235±0.00 0.244±0.00 0.124±0.00 N/A 0.510±0.00 0.422±0.00 N/A 0.706±0.00
ENSG00000232546 ENST00000419595 0.038±0.00 N/A N/A N/A N/A N/A 0.102±0.00 0.145±0.00 N/A 0.065±0.00 N/A 0.339±0.00 N/A 0.266±0.20
ENSG00000243335 ENST00000275532 1.473±0.00 3.076±0.00 N/A 3.592±0.79 1.542±0.54 1.982±0.00 0.733±0.15 0.515±0.00 2.241±0.00 1.927±0.25 0.970±0.00 5.259±2.49 2.089±0.02 6.655±0.31
ENST00000443322 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000449064 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503687 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000271064 ENST00000603786 0.393±0.00 1.173±0.00 5.767±0.00 N/A 3.281±0.00 N/A N/A N/A 2.754±0.00 N/A N/A 0.257±0.00 N/A 0.076±0.00
ENSG00000272831 ENST00000607978 N/A N/A N/A N/A 14.172±0.00 20.239±0.00 N/A 4.560±0.00 5.861±0.00 11.134±0.00 N/A N/A N/A N/A
ENSG00000273142 ENST00000610177 0.808±0.00 2.637±0.00 N/A 0.585±0.00 1.065±0.00 0.267±0.06 0.543±0.00 1.046±0.00 0.705±0.00 1.849±0.00 0.461±0.13 2.359±0.49 0.479±0.06 8.361±4.87
ENSG00000274135 ENST00000570437 0.368±0.00 0.391±0.00 0.628±0.00 0.283±0.00 N/A 0.122±0.00 0.260±0.07 0.069±0.00 0.060±0.00 N/A 0.179±0.00 1.020±0.49 0.226±0.00 0.415±0.36
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025340 ENSMUST00000026390 N/A 4.992±0.42 N/A N/A 4.294±1.94 5.219±0.27 N/A N/A 0.771±0.00 N/A N/A 4.872±1.05 N/A N/A
ENSMUST00000119027 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000119797 3.467±0.26 1.647±0.00 14.219±3.44 3.720±1.00 4.016±1.85 5.812±0.16 3.680±1.51 4.338±0.97 6.634±2.45 9.066±1.66 16.913±3.44 3.698±1.16 7.076±3.12 2.402±0.51
ENSMUST00000125937 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143727 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143865 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147493 3.592±0.91 9.888±2.37 N/A 3.418±0.00 5.708±1.06 7.768±1.35 2.966±0.00 3.320±0.00 2.267±0.31 5.478±1.07 N/A 7.371±2.56 N/A 1.340±0.09
ENSMUST00000148264 N/A N/A N/A 8.469±0.00 N/A N/A N/A N/A N/A N/A N/A 15.748±0.00 14.097±4.84 1.248±0.00
ENSMUSG00000053094 ENSMUST00000065329 N/A N/A N/A N/A N/A N/A N/A N/A 2.462±0.08 N/A N/A 12.890±1.36 13.519±8.05 N/A
ENSMUST00000111298 17.137±1.35 41.709±0.90 15.554±0.80 9.179±2.23 16.291±7.31 26.745±1.30 7.513±3.35 14.934±2.29 15.234±3.64 29.864±3.53 9.766±2.51 25.680±10.29 17.615±7.62 15.963±6.30
ENSMUSG00000080893 ENSMUST00000118998 20.106±4.17 5.361±1.25 1.211±0.61 2.008±0.69 8.869±2.50 6.013±2.13 35.440±2.58 25.214±7.91 4.781±4.62 5.503±2.55 1.115±0.83 8.209±6.43 11.929±15.48 15.227±5.17
ENSMUSG00000094092 ENSMUST00000119542 0.467±0.00 0.756±0.06 0.871±0.00 0.540±0.00 0.717±0.18 1.066±0.00 0.170±0.05 0.205±0.07 0.322±0.10 0.849±0.28 0.086±0.02 1.073±0.58 0.292±0.17 0.176±0.06

Loading