C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 12340
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000121617 Gm12340-001 ENSMUSG00000080701 10090 + 11:76144258-76144719 unprocessed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENSMUST00000121617
Transcript ID Adipose Bladder Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000121617 0.221±0.09 0.077±0.00 0.147±0.03 0.217±0.04 0.280±0.11 0.168±0.06 0.191±0.21 0.165±0.07 0.477±0.07 0.213±0.00 0.151±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006AN CIL_0006AN_0003 CGP 11:76019194-76179647

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000111140 RPL29-201 protein_coding Danio_rerio 1e-29 134
ENST00000294189 RPL29-001 protein_coding Homo_sapiens 0 302
ENST00000413677 RP4-595K12.1-001 processed_pseudogene Homo_sapiens 0 276
ENST00000425197 RPL29P19-001 processed_pseudogene Homo_sapiens 0 231
ENST00000431445 AC087650.1-001 processed_pseudogene Homo_sapiens 0 246
ENST00000443998 RP11-632C17__A.1-001 processed_pseudogene Homo_sapiens 0 296
ENST00000449887 RP11-166O4.4-001 unprocessed_pseudogene Homo_sapiens 0.00000001 64
ENST00000465069 RPL29P25-001 processed_pseudogene Homo_sapiens 0 230
ENST00000465434 RPL29P24-001 processed_pseudogene Homo_sapiens 0 233
ENST00000465776 RP11-200A13.2-001 processed_pseudogene Homo_sapiens 0 267
ENST00000466397 RPL29-005 protein_coding Homo_sapiens 0 302
ENST00000470368 RPL29P30-002 processed_transcript Homo_sapiens 0 244
ENST00000475248 RPL29-008 protein_coding Homo_sapiens 0 302
ENST00000478358 RP11-490G8.1-001 processed_pseudogene Homo_sapiens 0 313
ENST00000479017 RPL29-009 protein_coding Homo_sapiens 0 302
ENST00000480306 RPL29-004 nonsense_mediated_decay Homo_sapiens 0 220
ENST00000482584 RP11-342F17.1-001 processed_pseudogene Homo_sapiens 0 231
ENST00000484381 RPL29P30-001 transcribed_processed_pseudogene Homo_sapiens 0 244
ENST00000488409 RPL29P2-001 transcribed_processed_pseudogene Homo_sapiens 0 217
ENST00000492277 RPL29-007 protein_coding Homo_sapiens 0 302
ENST00000494408 RPL29P11-001 processed_pseudogene Homo_sapiens 0 291
ENST00000495383 RPL29-006 protein_coding Homo_sapiens 0 302
ENST00000498671 RPL29P2-002 processed_transcript Homo_sapiens 0 217

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