C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000475768 AP000797.1-001 ENSG00000244259 9606 - 11:115950196-115950801 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLungOvaryTestisENST00000475768
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Lung Ovary Testis
ENST00000475768 0.098±0.00 0.251±0.00 0.127±0.00 0.047±0.00 0.045±0.00 0.050±0.00 0.022±0.00 0.033±0.00 0.070±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00080B CIL_00080B_0001 VISTA 11:115352903-115953688
CIL_000803 CIL_000803_0001 VISTA 11:115443250-116048688
CIL_0007JB CIL_0007JB_0007 UCNEbase 11:115489207-116083402

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000105169 Gm4294-201 processed_pseudogene Mus_musculus 0 606
ENSMUST00000088480 Rpl15-ps3-001 processed_pseudogene Mus_musculus 0 606
ENSMUST00000112598 Rpl15-005 protein_coding Mus_musculus 0 606
ENSMUST00000079419 Rpl15-004 protein_coding Mus_musculus 0 606
ENSMUST00000100799 Rpl15-002 protein_coding Mus_musculus 0 606
ENSMUST00000080281 Rpl15-001 protein_coding Mus_musculus 0 606
ENSMUST00000081993 Gm10020-201 protein_coding Mus_musculus 0 601
ENSMUST00000184247 Rpl15-ps2-001 processed_pseudogene Mus_musculus 0 592
ENSMUST00000119496 Gm10224-001 processed_pseudogene Mus_musculus 0 584
ENSMUST00000121621 Gm12726-001 processed_pseudogene Mus_musculus 0 532
ENSMUST00000120953 Gm13413-001 processed_pseudogene Mus_musculus 0 529
ENSMUST00000097103 Gm8420-001 processed_pseudogene Mus_musculus 0 527
ENSMUST00000189382 RP23-277E3.1-001 processed_pseudogene Mus_musculus 0 516
ENSMUST00000121557 Gm13688-001 processed_pseudogene Mus_musculus 0 514
ENSMUST00000122161 Gm16210-001 processed_pseudogene Mus_musculus 0 486
ENSMUST00000121890 Gm12035-001 processed_pseudogene Mus_musculus 0 451
ENSMUST00000117231 Gm11191-001 processed_pseudogene Mus_musculus 0 435
ENSMUST00000118944 Gm15400-001 processed_pseudogene Mus_musculus 0 427
ENSMUST00000073317 Gm5292-001 processed_pseudogene Mus_musculus 0 398
ENSMUST00000118237 Gm11500-001 processed_pseudogene Mus_musculus 0 383
ENSMUST00000120694 Rpl15-ps1-001 processed_pseudogene Mus_musculus 0 348
ENSMUST00000132957 Gm15733-001 processed_pseudogene Mus_musculus 2e-37 159
ENSMUST00000122372 Rpl15-ps4-001 processed_pseudogene Mus_musculus 2e-32 143
ENSMUST00000159873 Gm3329-001 processed_pseudogene Mus_musculus 2e-32 143

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