C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S12, pseudogene 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000086764 Rps12-ps3-201 ENSMUSG00000067038 10090 + 19:59322290-59322783 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000086764
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000086764 17.676±2.76 116.816±24.91 37.911±5.98 20.617±6.13 13.290±6.56 44.967±34.57 11.130±6.25 31.308±13.76 72.039±46.91 17.780±1.35 11.229±0.90 135.816±51.67 150.586±233.91 28.481±5.98

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YJ CIL_0007YJ_0002 VISTA 19:58832961-59434097
CIL_0007ZF CIL_0007ZF_0002 VISTA 19:58834549-59435577
CIL_0008H6 CIL_0008H6_0002 VISTA 19:58967128-59568278
CIL_0007KI CIL_0007KI_0003 UCNEbase 19:59043463-60359839
CIL_0008MK CIL_0008MK_0002 VISTA 19:59123214-59725570
CIL_0008G5 CIL_0008G5_0002 VISTA 19:59165505-59766798
CIL_0007ZG CIL_0007ZG_0002 VISTA 19:59166736-59767688
CIL_0008EZ CIL_0008EZ_0002 VISTA 19:59169921-59771302
CIL_00046Y CIL_00046Y_0003 CGP 19:59260878-59345780

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005840 IEA ribosome
GO:0006412 IEA translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000230050 RPS12-001 protein_coding Homo_sapiens 0 636
ENST00000407698 RP11-812I20.2-001 processed_pseudogene Homo_sapiens 0 318
ENST00000414823 AC009413.2-001 processed_pseudogene Homo_sapiens 0 501
ENST00000415024 RP11-313E4.1-001 processed_pseudogene Homo_sapiens 0 309
ENST00000419579 RPS12P23-001 processed_pseudogene Homo_sapiens 0 483
ENST00000428553 RP11-864N7.2-001 processed_pseudogene Homo_sapiens 0 545
ENST00000440335 RP11-613F7.1-001 processed_pseudogene Homo_sapiens 0 494
ENST00000442381 RPS12P18-001 processed_pseudogene Homo_sapiens 0 307
ENST00000461060 RP11-621K7.1-001 processed_pseudogene Homo_sapiens 0 470
ENST00000463278 CTC-398G3.2-001 processed_pseudogene Homo_sapiens 0 514
ENST00000464109 RPS12P20-001 processed_pseudogene Homo_sapiens 5.99994e-41 171
ENST00000484182 RP11-538P18.1-001 processed_pseudogene Homo_sapiens 0 228
ENST00000484616 RPS12-002 retained_intron Homo_sapiens 0 285
ENST00000492017 RPS12P26-001 transcribed_processed_pseudogene Homo_sapiens 0 457
ENST00000616756 RP11-174N3.4-001 processed_pseudogene Homo_sapiens 0 226

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