C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008YO_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs906 VISTA 9606 4:144055661-144657567
GeneTranscriptPositionBiotype
ENSG00000164161 (HHIP)
hedgehog interacting protein 		ENST00000296575 (HHIP-001) 144646021-144745271 protein_coding
ENST00000434550 (HHIP-002) 144646172-144660273 protein_coding
ENST00000503090 (HHIP-005) 144734867-144738893 processed_transcript
ENST00000505891 (HHIP-008) 144647099-144659776 processed_transcript
ENST00000509630 (HHIP-004) 144652659-144685665 processed_transcript
ENST00000511314 (HHIP-003) 144648180-144659856 processed_transcript
ENST00000512791 (HHIP-006) 144708131-144715623 retained_intron
ENST00000515080 (HHIP-007) 144650615-144658839 processed_transcript
ENSG00000170180 (GYPA)
glycophorin A (MNS blood group) 		ENST00000324022 (GYPA-002) 144111055-144140693 protein_coding
ENST00000360771 (GYPA-001) 144109304-144140751 protein_coding
ENST00000503627 (GYPA-006) 144111394-144140635 protein_coding
ENST00000504786 (GYPA-005) 144111394-144140635 protein_coding
ENST00000508337 (GYPA-003) 144111345-144140672 nonsense_mediated_decay
ENST00000509346 (GYPA-010) 144118564-144140693 retained_intron
ENST00000510771 (GYPA-008) 144110919-144114905 retained_intron
ENST00000512064 (GYPA-007) 144111367-144140635 protein_coding
ENST00000512789 (GYPA-004) 144111394-144140635 protein_coding
ENST00000514603 (GYPA-009) 144119363-144140693 retained_intron
ENST00000535709 (GYPA-201) 144111344-144140669 protein_coding
ENST00000616983 (GYPA-202) 144109303-144127908 protein_coding
ENSG00000248828 (RP11-673E1.4)
 ENST00000506982 (RP11-673E1.4-001) 143953635-144126359 antisense
ENSG00000248890 (HHIP-AS1)
HHIP antisense RNA 1 		ENST00000503066 (HHIP-AS1-003) 144643224-144645912 antisense
ENST00000508269 (HHIP-AS1-002) 144642922-144645987 antisense
ENST00000512359 (HHIP-AS1-001) 144643372-144661357 antisense
ENSG00000250504 (KRT18P51)
keratin 18 pseudogene 51 		ENST00000504966 (KRT18P51-001) 144572238-144572983 processed_pseudogene
ENSG00000261129 (RP11-361D14.2)
 ENST00000568324 (RP11-361D14.2-001) 144505900-144509001 lincRNA

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0008YO_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs906 VISTA 10090 8:80014046-80615940
GeneTranscriptPositionBiotype
ENSMUSG00000042353 (Frem3)
Fras1 related extracellular matrix protein 3 		ENSMUST00000039695 (Frem3-001) 80611080-80695356 protein_coding
ENSMUSG00000051839 (Gypa)
glycophorin A 		ENSMUST00000063359 (Gypa-201) 80494045-80510785 protein_coding
ENSMUSG00000064325 (Hhip)
Hedgehog-interacting protein 		ENSMUST00000079038 (Hhip-001) 79970345-80058006 protein_coding
ENSMUST00000155850 (Hhip-002) 79966115-79990349 processed_transcript
ENSMUSG00000082491 (Gm5909)
predicted gene 5909 		ENSMUST00000119768 (Gm5909-001) 80110806-80112086 processed_pseudogene
ENSMUSG00000086912 (4930505O20Rik)
RIKEN cDNA 4930505O20 gene 		ENSMUST00000142188 (4930505O20Rik-001) 80511842-80514473 antisense

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008YO_0001ENSG00000164161ENST00000296575ENST00000434550ENST00000503090ENST00000505891ENST00000509630ENST00000511314ENST00000512791ENST00000515080ENSG00000170180ENST00000324022ENST00000360771ENST00000503627ENST00000504786ENST00000508337ENST00000509346ENST00000510771ENST00000512064ENST00000512789ENST00000514603ENST00000535709ENST00000616983ENSG00000248828ENST00000506982ENSG00000248890ENST00000503066ENST00000508269ENST00000512359ENSG00000250504ENST00000504966ENSG00000261129ENST00000568324CIL_0008YO_0002ENSMUSG00000042353ENSMUST00000039695ENSMUSG00000051839ENSMUST00000063359ENSMUSG00000064325ENSMUST00000079038ENSMUST00000155850ENSMUSG00000082491ENSMUST00000119768ENSMUSG00000086912ENSMUST00000142188
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008YO_0001ENSG00000164161ENST00000296575ENST00000434550ENST00000509630ENST00000512791ENSG00000170180ENST00000324022ENST00000360771ENST00000508337ENST00000510771ENST00000512789ENST00000514603ENST00000616983ENSG00000248828ENST00000506982ENSG00000248890ENST00000503066ENST00000508269ENST00000512359ENSG00000250504ENST00000504966ENSG00000261129ENST00000568324CIL_0008YO_0002ENSMUSG00000042353ENSMUST00000039695ENSMUSG00000051839ENSMUST00000063359ENSMUSG00000064325ENSMUST00000079038ENSMUST00000155850ENSMUSG00000082491ENSMUST00000119768ENSMUSG00000086912ENSMUST00000142188
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000164161 ENST00000296575 0.051±0.00 0.065±0.00 0.405±0.00 3.394±0.58 0.794±0.46 1.446±0.96 0.059±0.00 1.585±1.14 0.875±0.26 3.840±2.11 0.056±0.00 0.141±0.05 0.018±0.01 1.859±1.37
ENST00000434550 N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.992±0.90 N/A 0.426±0.00 N/A N/A
ENST00000503090 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505891 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509630 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.203±0.00 0.073±0.00 N/A
ENST00000511314 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512791 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.900±0.00 N/A N/A
ENST00000515080 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000170180 ENST00000324022 0.085±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.741±0.00 N/A N/A 0.312±0.00 0.037±0.00
ENST00000360771 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.260±0.00 N/A
ENST00000503627 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504786 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508337 N/A N/A N/A 0.035±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509346 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510771 0.130±0.00 N/A 0.654±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.062±0.00
ENST00000512064 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512789 0.266±0.00 N/A N/A N/A N/A 0.365±0.00 N/A 0.392±0.00 N/A N/A N/A N/A 1.865±0.00 N/A
ENST00000514603 N/A N/A N/A 0.357±0.00 N/A N/A N/A N/A 0.533±0.00 N/A N/A N/A N/A 0.054±0.00
ENST00000535709 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000616983 N/A N/A 0.046±0.00 0.037±0.00 0.015±0.00 N/A N/A 0.061±0.00 0.011±0.00 0.413±0.00 N/A N/A 0.256±0.00 N/A
ENSG00000248828 ENST00000506982 0.014±0.00 0.041±0.00 N/A 0.260±0.20 0.062±0.00 0.207±0.00 0.114±0.08 0.080±0.00 N/A 0.118±0.00 N/A 0.114±0.00 0.045±0.00 0.037±0.00
ENSG00000248890 ENST00000503066 0.289±0.00 N/A N/A N/A N/A N/A 0.266±0.00 N/A N/A N/A 0.316±0.00 N/A N/A N/A
ENST00000508269 0.256±0.00 N/A N/A N/A N/A N/A 0.161±0.00 N/A N/A N/A 0.418±0.00 2.250±0.09 0.085±0.00 N/A
ENST00000512359 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.157±0.00 N/A
ENSG00000250504 ENST00000504966 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.027±0.00 N/A N/A N/A N/A
ENSG00000261129 ENST00000568324 N/A N/A N/A 0.026±0.00 N/A N/A N/A N/A N/A N/A N/A 0.040±0.00 N/A 0.035±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000042353 ENSMUST00000039695 N/A N/A 0.009±0.00 0.245±0.22 N/A N/A 0.010±0.00 0.004±0.00 0.047±0.04 0.006±0.00 0.008±0.00 0.083±0.04 0.017±0.01 0.121±0.04
ENSMUSG00000051839 ENSMUST00000063359 0.100±0.04 N/A 0.066±0.01 0.432±0.08 0.063±0.00 0.132±0.05 0.961±0.83 0.047±0.02 365.102±150.90 0.433±0.27 N/A 0.034±0.02 8.227±7.06 0.062±0.05
ENSMUSG00000064325 ENSMUST00000079038 0.309±0.30 0.198±0.05 N/A 0.217±0.10 0.146±0.05 1.344±0.35 0.030±0.02 0.127±0.05 0.123±0.06 3.302±1.09 0.019±0.01 0.845±0.36 0.089±0.04 0.124±0.11
ENSMUST00000155850 0.116±0.04 N/A N/A 0.776±0.00 N/A N/A 0.039±0.00 N/A 0.275±0.06 N/A 0.074±0.02 3.291±0.00 0.326±0.10 0.208±0.01
ENSMUSG00000082491 ENSMUST00000119768 0.047±0.01 N/A N/A 0.749±0.21 0.105±0.00 0.130±0.00 0.041±0.00 0.060±0.02 0.088±0.10 N/A 0.045±0.01 0.107±0.13 0.072±0.07 0.424±0.43
ENSMUSG00000086912 ENSMUST00000142188 0.043±0.01 N/A N/A 0.022±0.00 N/A N/A N/A 0.018±0.00 0.022±0.01 0.024±0.00 N/A 0.165±0.07 0.059±0.00 1.677±0.78

Loading