C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008YO_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs906 VISTA 9606 4:144055661-144657567
GeneTranscriptPositionBiotype
ENSG00000164161 (HHIP)
hedgehog interacting protein 		ENST00000296575 (HHIP-001) 144646021-144745271 protein_coding
ENST00000434550 (HHIP-002) 144646172-144660273 protein_coding
ENST00000503090 (HHIP-005) 144734867-144738893 processed_transcript
ENST00000505891 (HHIP-008) 144647099-144659776 processed_transcript
ENST00000509630 (HHIP-004) 144652659-144685665 processed_transcript
ENST00000511314 (HHIP-003) 144648180-144659856 processed_transcript
ENST00000512791 (HHIP-006) 144708131-144715623 retained_intron
ENST00000515080 (HHIP-007) 144650615-144658839 processed_transcript
ENSG00000170180 (GYPA)
glycophorin A (MNS blood group) 		ENST00000324022 (GYPA-002) 144111055-144140693 protein_coding
ENST00000360771 (GYPA-001) 144109304-144140751 protein_coding
ENST00000503627 (GYPA-006) 144111394-144140635 protein_coding
ENST00000504786 (GYPA-005) 144111394-144140635 protein_coding
ENST00000508337 (GYPA-003) 144111345-144140672 nonsense_mediated_decay
ENST00000509346 (GYPA-010) 144118564-144140693 retained_intron
ENST00000510771 (GYPA-008) 144110919-144114905 retained_intron
ENST00000512064 (GYPA-007) 144111367-144140635 protein_coding
ENST00000512789 (GYPA-004) 144111394-144140635 protein_coding
ENST00000514603 (GYPA-009) 144119363-144140693 retained_intron
ENST00000535709 (GYPA-201) 144111344-144140669 protein_coding
ENST00000616983 (GYPA-202) 144109303-144127908 protein_coding
ENSG00000248828 (RP11-673E1.4)
 ENST00000506982 (RP11-673E1.4-001) 143953635-144126359 antisense
ENSG00000248890 (HHIP-AS1)
HHIP antisense RNA 1 		ENST00000503066 (HHIP-AS1-003) 144643224-144645912 antisense
ENST00000508269 (HHIP-AS1-002) 144642922-144645987 antisense
ENST00000512359 (HHIP-AS1-001) 144643372-144661357 antisense
ENSG00000250504 (KRT18P51)
keratin 18 pseudogene 51 		ENST00000504966 (KRT18P51-001) 144572238-144572983 processed_pseudogene
ENSG00000261129 (RP11-361D14.2)
 ENST00000568324 (RP11-361D14.2-001) 144505900-144509001 lincRNA
CIL_0008YO_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs906 VISTA 10090 8:80014046-80615940
GeneTranscriptPositionBiotype
ENSMUSG00000042353 (Frem3)
Fras1 related extracellular matrix protein 3 		ENSMUST00000039695 (Frem3-001) 80611080-80695356 protein_coding
ENSMUSG00000051839 (Gypa)
glycophorin A 		ENSMUST00000063359 (Gypa-201) 80494045-80510785 protein_coding
ENSMUSG00000064325 (Hhip)
Hedgehog-interacting protein 		ENSMUST00000079038 (Hhip-001) 79970345-80058006 protein_coding
ENSMUST00000155850 (Hhip-002) 79966115-79990349 processed_transcript
ENSMUSG00000082491 (Gm5909)
predicted gene 5909 		ENSMUST00000119768 (Gm5909-001) 80110806-80112086 processed_pseudogene
ENSMUSG00000086912 (4930505O20Rik)
RIKEN cDNA 4930505O20 gene 		ENSMUST00000142188 (4930505O20Rik-001) 80511842-80514473 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008YO_0001ENSG00000164161ENST00000296575ENST00000434550ENST00000503090ENST00000505891ENST00000509630ENST00000511314ENST00000512791ENST00000515080ENSG00000170180ENST00000324022ENST00000360771ENST00000503627ENST00000504786ENST00000508337ENST00000509346ENST00000510771ENST00000512064ENST00000512789ENST00000514603ENST00000535709ENST00000616983ENSG00000248828ENST00000506982ENSG00000248890ENST00000503066ENST00000508269ENST00000512359ENSG00000250504ENST00000504966ENSG00000261129ENST00000568324CIL_0008YO_0002ENSMUSG00000042353ENSMUST00000039695ENSMUSG00000051839ENSMUST00000063359ENSMUSG00000064325ENSMUST00000079038ENSMUST00000155850ENSMUSG00000082491ENSMUST00000119768ENSMUSG00000086912ENSMUST00000142188
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008YO_0001ENSG00000164161ENST00000296575ENST00000434550ENST00000509630ENST00000512791ENSG00000170180ENST00000324022ENST00000360771ENST00000508337ENST00000510771ENST00000512789ENST00000514603ENST00000616983ENSG00000248828ENST00000506982ENSG00000248890ENST00000503066ENST00000508269ENST00000512359ENSG00000250504ENST00000504966ENSG00000261129ENST00000568324CIL_0008YO_0002ENSMUSG00000042353ENSMUST00000039695ENSMUSG00000051839ENSMUST00000063359ENSMUSG00000064325ENSMUST00000079038ENSMUST00000155850ENSMUSG00000082491ENSMUST00000119768ENSMUSG00000086912ENSMUST00000142188
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000164161 ENST00000296575 0.051±0.00 0.065±0.00 0.405±0.00 3.394±0.58 0.794±0.46 1.446±0.96 0.059±0.00 1.585±1.14 0.875±0.26 3.840±2.11 0.056±0.00 0.141±0.05 0.018±0.01 1.859±1.37
ENST00000434550 N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.992±0.90 N/A 0.426±0.00 N/A N/A
ENST00000503090 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505891 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509630 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.203±0.00 0.073±0.00 N/A
ENST00000511314 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512791 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.900±0.00 N/A N/A
ENST00000515080 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000170180 ENST00000324022 0.085±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.741±0.00 N/A N/A 0.312±0.00 0.037±0.00
ENST00000360771 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.260±0.00 N/A
ENST00000503627 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504786 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508337 N/A N/A N/A 0.035±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509346 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510771 0.130±0.00 N/A 0.654±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.062±0.00
ENST00000512064 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512789 0.266±0.00 N/A N/A N/A N/A 0.365±0.00 N/A 0.392±0.00 N/A N/A N/A N/A 1.865±0.00 N/A
ENST00000514603 N/A N/A N/A 0.357±0.00 N/A N/A N/A N/A 0.533±0.00 N/A N/A N/A N/A 0.054±0.00
ENST00000535709 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000616983 N/A N/A 0.046±0.00 0.037±0.00 0.015±0.00 N/A N/A 0.061±0.00 0.011±0.00 0.413±0.00 N/A N/A 0.256±0.00 N/A
ENSG00000248828 ENST00000506982 0.014±0.00 0.041±0.00 N/A 0.260±0.20 0.062±0.00 0.207±0.00 0.114±0.08 0.080±0.00 N/A 0.118±0.00 N/A 0.114±0.00 0.045±0.00 0.037±0.00
ENSG00000248890 ENST00000503066 0.289±0.00 N/A N/A N/A N/A N/A 0.266±0.00 N/A N/A N/A 0.316±0.00 N/A N/A N/A
ENST00000508269 0.256±0.00 N/A N/A N/A N/A N/A 0.161±0.00 N/A N/A N/A 0.418±0.00 2.250±0.09 0.085±0.00 N/A
ENST00000512359 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.157±0.00 N/A
ENSG00000250504 ENST00000504966 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.027±0.00 N/A N/A N/A N/A
ENSG00000261129 ENST00000568324 N/A N/A N/A 0.026±0.00 N/A N/A N/A N/A N/A N/A N/A 0.040±0.00 N/A 0.035±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000042353 ENSMUST00000039695 N/A N/A 0.009±0.00 0.245±0.22 N/A N/A 0.010±0.00 0.004±0.00 0.047±0.04 0.006±0.00 0.008±0.00 0.083±0.04 0.017±0.01 0.121±0.04
ENSMUSG00000051839 ENSMUST00000063359 0.100±0.04 N/A 0.066±0.01 0.432±0.08 0.063±0.00 0.132±0.05 0.961±0.83 0.047±0.02 365.102±150.90 0.433±0.27 N/A 0.034±0.02 8.227±7.06 0.062±0.05
ENSMUSG00000064325 ENSMUST00000079038 0.309±0.30 0.198±0.05 N/A 0.217±0.10 0.146±0.05 1.344±0.35 0.030±0.02 0.127±0.05 0.123±0.06 3.302±1.09 0.019±0.01 0.845±0.36 0.089±0.04 0.124±0.11
ENSMUST00000155850 0.116±0.04 N/A N/A 0.776±0.00 N/A N/A 0.039±0.00 N/A 0.275±0.06 N/A 0.074±0.02 3.291±0.00 0.326±0.10 0.208±0.01
ENSMUSG00000082491 ENSMUST00000119768 0.047±0.01 N/A N/A 0.749±0.21 0.105±0.00 0.130±0.00 0.041±0.00 0.060±0.02 0.088±0.10 N/A 0.045±0.01 0.107±0.13 0.072±0.07 0.424±0.43
ENSMUSG00000086912 ENSMUST00000142188 0.043±0.01 N/A N/A 0.022±0.00 N/A N/A N/A 0.018±0.00 0.022±0.01 0.024±0.00 N/A 0.165±0.07 0.059±0.00 1.677±0.78

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