C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted pseudogene 3272
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000181181 Gm3272-001 ENSMUSG00000078967 10090 - 8:92715747-92716975 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000181181
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000181181 0.326±0.04 0.694±0.15 0.213±0.05 1.534±1.43 0.369±0.17 0.265±0.14 0.430±0.13 0.735±0.15 0.428±0.36 0.432±0.06 0.998±0.23 0.430±0.23 0.273±0.18 0.426±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ON CIL_0007ON_0003 UCNEbase 8:88447800-92743752
CIL_000986 CIL_000986_0002 VISTA 8:92144893-92745556
CIL_000989 CIL_000989_0002 VISTA 8:92149353-92750411
CIL_00098A CIL_00098A_0002 VISTA 8:92245404-92846474
CIL_000987 CIL_000987_0002 VISTA 8:92255075-92855722
CIL_0007WY CIL_0007WY_0002 VISTA 8:92348089-92949598
CIL_000988 CIL_000988_0002 VISTA 8:92435258-93036114
CIL_00098D CIL_00098D_0002 VISTA 8:92442867-93044200
CIL_0001GQ CIL_0001GQ_0002 CGP 8:92674288-92853417

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000058384 gapdhs-001 protein_coding Danio_rerio 0 477
ENST00000229239 GAPDH-001 protein_coding Homo_sapiens 0 1301
ENST00000396856 GAPDH-004 protein_coding Homo_sapiens 0 1024
ENST00000396858 GAPDH-008 protein_coding Homo_sapiens 0 1275
ENST00000396859 GAPDH-003 protein_coding Homo_sapiens 0 1301
ENST00000396861 GAPDH-002 protein_coding Homo_sapiens 0 1301
ENST00000398586 GAPDHP15-001 processed_pseudogene Homo_sapiens 0 577
ENST00000402643 GAPDHP72-001 processed_pseudogene Homo_sapiens 0 1013
ENST00000403475 RP11-378G13.2-001 processed_pseudogene Homo_sapiens 0 953
ENST00000405405 GAPDHP63-001 processed_pseudogene Homo_sapiens 0 1062
ENST00000419696 GAPDHP64-001 processed_pseudogene Homo_sapiens 0 933
ENST00000422905 GAPDHP67-001 processed_pseudogene Homo_sapiens 0 329
ENST00000423136 GAPDHP55-001 processed_pseudogene Homo_sapiens 0 658
ENST00000423411 GAPDHP73-001 processed_pseudogene Homo_sapiens 0 920
ENST00000424043 GAPDHP46-001 processed_pseudogene Homo_sapiens 0 865
ENST00000425487 GAPDHP65-001 processed_pseudogene Homo_sapiens 0 1138
ENST00000425504 GAPDHP69-001 processed_pseudogene Homo_sapiens 0 966
ENST00000426454 GAPDHP51-001 processed_pseudogene Homo_sapiens 0 769
ENST00000429913 GAPDHP29-001 processed_pseudogene Homo_sapiens 0 680
ENST00000432206 GAPDHP2-001 processed_pseudogene Homo_sapiens 0 917
ENST00000436626 GAPDHP48-001 processed_pseudogene Homo_sapiens 0 628
ENST00000436818 GAPDHP26-001 processed_pseudogene Homo_sapiens 0 771
ENST00000438477 GAPDHP58-001 processed_pseudogene Homo_sapiens 0 870
ENST00000442317 GAPDHP37-001 processed_pseudogene Homo_sapiens 0 706
ENST00000444107 GAPDHP20-001 processed_pseudogene Homo_sapiens 0 699
ENST00000444823 GAPDHP23-001 processed_pseudogene Homo_sapiens 0 695
ENST00000445880 RP1-52D1.1-001 processed_pseudogene Homo_sapiens 9e-34 145
ENST00000447427 GAPDHP27-001 processed_pseudogene Homo_sapiens 0 601
ENST00000450301 GAPDHP21-001 processed_pseudogene Homo_sapiens 0 863
ENST00000450472 GAPDHP14-001 processed_pseudogene Homo_sapiens 0 520
ENST00000452570 GAPDHP1-001 processed_pseudogene Homo_sapiens 0 1184
ENST00000455134 GAPDHP28-001 processed_pseudogene Homo_sapiens 0 876
ENST00000466525 GAPDH-007 retained_intron Homo_sapiens 0 680
ENST00000466588 GAPDH-005 retained_intron Homo_sapiens 0 1024
ENST00000474249 GAPDH-006 retained_intron Homo_sapiens 0 1024
ENST00000481866 GAPDHP39-001 processed_pseudogene Homo_sapiens 0 658
ENST00000492719 GAPDH-011 retained_intron Homo_sapiens 0 883
ENST00000503632 GAPDHP38-001 processed_pseudogene Homo_sapiens 0 931
ENST00000505218 GAPDHP40-001 processed_pseudogene Homo_sapiens 0 942
ENST00000507324 GAPDHP61-001 processed_pseudogene Homo_sapiens 0 1018
ENST00000509325 GAPDHP31-001 processed_pseudogene Homo_sapiens 0 721
ENST00000512110 AC007016.3-001 processed_pseudogene Homo_sapiens 0 300
ENST00000512278 GAPDHP76-001 unprocessed_pseudogene Homo_sapiens 0 309
ENST00000513369 RP11-159J3.1-001 processed_pseudogene Homo_sapiens 0 941
ENST00000513513 GAPDHP44-001 processed_pseudogene Homo_sapiens 0 974
ENST00000513846 GAPDHP60-001 processed_pseudogene Homo_sapiens 0 1013
ENST00000513953 RP11-44N17.1-001 processed_pseudogene Homo_sapiens 0 647
ENST00000515313 GAPDHP62-001 processed_pseudogene Homo_sapiens 0 909
ENST00000520713 ANKRD46-009 processed_transcript Homo_sapiens 0 798
ENST00000524319 ANKRD46-003 processed_transcript Homo_sapiens 0 798
ENST00000613707 RP11-343D24.1-001 processed_pseudogene Homo_sapiens 0 625
ENST00000619601 GAPDH-201 protein_coding Homo_sapiens 0 1155

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