C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 3809
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000180973 Gm3809-001 ENSMUSG00000097935 10090 + 1:186960508-186961513 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000180973
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000180973 0.094±0.03 0.059±0.01 0.225±0.22 0.211±0.04 0.175±0.13 0.077±0.02 0.220±0.03 0.111±0.09 0.117±0.12 0.087±0.00 0.068±0.03 0.259±0.22 0.042±0.04 1.061±0.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00086U CIL_00086U_0002 VISTA 1:186608316-187210077
CIL_00086S CIL_00086S_0002 VISTA 1:186622310-187223505
CIL_0007JY CIL_0007JY_0002 UCNEbase 1:186701249-188943182
CIL_000994 CIL_000994_0002 VISTA 1:186948277-187549469

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000058384 gapdhs-001 protein_coding Danio_rerio 0 388
ENST00000229239 GAPDH-001 protein_coding Homo_sapiens 0 1114
ENST00000396856 GAPDH-004 protein_coding Homo_sapiens 0 865
ENST00000396858 GAPDH-008 protein_coding Homo_sapiens 0 1099
ENST00000396859 GAPDH-003 protein_coding Homo_sapiens 0 1114
ENST00000396861 GAPDH-002 protein_coding Homo_sapiens 0 1114
ENST00000402643 GAPDHP72-001 processed_pseudogene Homo_sapiens 0 911
ENST00000403475 RP11-378G13.2-001 processed_pseudogene Homo_sapiens 0 843
ENST00000405405 GAPDHP63-001 processed_pseudogene Homo_sapiens 0 966
ENST00000419696 GAPDHP64-001 processed_pseudogene Homo_sapiens 0 828
ENST00000422905 GAPDHP67-001 processed_pseudogene Homo_sapiens 0 296
ENST00000423136 GAPDHP55-001 processed_pseudogene Homo_sapiens 0 595
ENST00000423411 GAPDHP73-001 processed_pseudogene Homo_sapiens 0 824
ENST00000424043 GAPDHP46-001 processed_pseudogene Homo_sapiens 0 811
ENST00000425487 GAPDHP65-001 processed_pseudogene Homo_sapiens 0 1014
ENST00000425504 GAPDHP69-001 processed_pseudogene Homo_sapiens 0 865
ENST00000426454 GAPDHP51-001 processed_pseudogene Homo_sapiens 0 662
ENST00000429913 GAPDHP29-001 processed_pseudogene Homo_sapiens 0 601
ENST00000432206 GAPDHP2-001 processed_pseudogene Homo_sapiens 0 843
ENST00000434621 GAPDHP68-001 processed_pseudogene Homo_sapiens 0 876
ENST00000436626 GAPDHP48-001 processed_pseudogene Homo_sapiens 0 586
ENST00000436818 GAPDHP26-001 processed_pseudogene Homo_sapiens 0 671
ENST00000438477 GAPDHP58-001 processed_pseudogene Homo_sapiens 0 754
ENST00000442317 GAPDHP37-001 processed_pseudogene Homo_sapiens 0 617
ENST00000444107 GAPDHP20-001 processed_pseudogene Homo_sapiens 0 643
ENST00000444823 GAPDHP23-001 processed_pseudogene Homo_sapiens 0 592
ENST00000447427 GAPDHP27-001 processed_pseudogene Homo_sapiens 0 555
ENST00000450301 GAPDHP21-001 processed_pseudogene Homo_sapiens 0 756
ENST00000452570 GAPDHP1-001 processed_pseudogene Homo_sapiens 0 1044
ENST00000455134 GAPDHP28-001 processed_pseudogene Homo_sapiens 0 806
ENST00000466525 GAPDH-007 retained_intron Homo_sapiens 0 545
ENST00000466588 GAPDH-005 retained_intron Homo_sapiens 0 865
ENST00000474249 GAPDH-006 retained_intron Homo_sapiens 0 865
ENST00000481866 GAPDHP39-001 processed_pseudogene Homo_sapiens 0 604
ENST00000492719 GAPDH-011 retained_intron Homo_sapiens 0 782
ENST00000503632 GAPDHP38-001 processed_pseudogene Homo_sapiens 0 863
ENST00000507324 GAPDHP61-001 processed_pseudogene Homo_sapiens 0 894
ENST00000509325 GAPDHP31-001 processed_pseudogene Homo_sapiens 0 630
ENST00000511530 GAPDHP71-001 processed_pseudogene Homo_sapiens 0 880
ENST00000512110 AC007016.3-001 processed_pseudogene Homo_sapiens 0 272
ENST00000512278 GAPDHP76-001 unprocessed_pseudogene Homo_sapiens 0 335
ENST00000513369 RP11-159J3.1-001 processed_pseudogene Homo_sapiens 0 822
ENST00000513513 GAPDHP44-001 processed_pseudogene Homo_sapiens 0 857
ENST00000513846 GAPDHP60-001 processed_pseudogene Homo_sapiens 0 933
ENST00000513953 RP11-44N17.1-001 processed_pseudogene Homo_sapiens 0 595
ENST00000515313 GAPDHP62-001 processed_pseudogene Homo_sapiens 0 841
ENST00000613707 RP11-343D24.1-001 processed_pseudogene Homo_sapiens 0 582
ENST00000619601 GAPDH-201 protein_coding Homo_sapiens 0 1002

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