C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: iroquois homeobox protein 1, a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000044190 irx1a-002 ENSDARG00000009510 7955 + 16:820650-824806 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OW CIL_0007OW_0004 UCNEbase 16:429462-1090747
CIL_0003O0 CIL_0003O0_0001 CGP 16:820641-1199727

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000022095 Irx4-001 protein_coding Mus_musculus 0 231
ENSMUST00000034185 Irx6-001 protein_coding Mus_musculus 0 213
ENSMUST00000093312 Irx3-002 protein_coding Mus_musculus 0 279
ENSMUST00000167261 Irx6-002 protein_coding Mus_musculus 0 213
ENSMUST00000175795 Irx3-001 protein_coding Mus_musculus 0 279
ENSMUST00000176684 Irx4-002 protein_coding Mus_musculus 0 231
ENST00000231357 IRX4-001 protein_coding Homo_sapiens 0 209
ENST00000290552 IRX6-001 protein_coding Homo_sapiens 0 213
ENST00000302006 IRX1-001 protein_coding Homo_sapiens 0 453
ENST00000320990 IRX5-002 protein_coding Homo_sapiens 1.99965e-42 178
ENST00000329734 IRX3-001 protein_coding Homo_sapiens 0 278
ENST00000394636 IRX5-001 protein_coding Homo_sapiens 1.99965e-42 178
ENST00000505790 IRX4-004 protein_coding Homo_sapiens 0 209
ENST00000505938 IRX4-006 processed_transcript Homo_sapiens 0 209
ENST00000508261 IRX4-002 nonsense_mediated_decay Homo_sapiens 0 209
ENST00000511126 IRX4-005 protein_coding Homo_sapiens 1e-35 154
ENST00000513692 IRX4-003 protein_coding Homo_sapiens 0 209
ENST00000558180 IRX3-002 retained_intron Homo_sapiens 0 270
ENST00000558315 IRX6-002 processed_transcript Homo_sapiens 0 202
ENST00000558597 IRX5-004 protein_coding Homo_sapiens 1.99965e-42 178
ENST00000613726 IRX4-201 protein_coding Homo_sapiens 0 209
ENST00000622814 IRX4-202 protein_coding Homo_sapiens 0 209

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