C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S18
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000131839 rps18-005 ENSDARG00000020153 7955 - 19:18309669-18318904 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainKidneyLiverMuscleENSDART00000131839
Transcript ID Brain Kidney Liver Muscle
ENSDART00000131839 93.988±0.00 543.200±0.00 175.032±0.00 229.550±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007AA CIL_0007AA_0001 CGP 19:18309520-18340857

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0003735 IEA structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005840 IEA ribosome
GO:0006412 IEA translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000008812 Rps18-001 protein_coding Mus_musculus 0 244
ENSMUST00000072050 Gm5321-001 processed_pseudogene Mus_musculus 3.9937e-43 178
ENSMUST00000074072 Gm10260-201 protein_coding Mus_musculus 0 239
ENSMUST00000077163 Gm11361-001 processed_pseudogene Mus_musculus 0 233
ENSMUST00000080443 Rps18-ps3-201 protein_coding Mus_musculus 0 239
ENSMUST00000116189 Gm12468-001 processed_pseudogene Mus_musculus 1e-32 143
ENSMUST00000119199 Gm6630-001 processed_pseudogene Mus_musculus 2e-32 143
ENSMUST00000120838 Rps18-ps1-001 processed_pseudogene Mus_musculus 0 217
ENSMUST00000121730 Gm15696-001 processed_pseudogene Mus_musculus 2.94273e-44 182
ENSMUST00000172799 Rps18-002 processed_transcript Mus_musculus 1.00053e-42 178
ENSMUST00000173323 Rps18-013 retained_intron Mus_musculus 2e-36 156
ENSMUST00000174175 Rps18-005 retained_intron Mus_musculus 0 244
ENSMUST00000174609 Rps18-006 protein_coding Mus_musculus 0 257
ENSMUST00000174620 Rps18-012 retained_intron Mus_musculus 0 241
ENSMUST00000174745 Rps18-011 processed_transcript Mus_musculus 0 241
ENSMUST00000174758 Rps18-008 retained_intron Mus_musculus 1.99965e-42 176

Loading