C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S18
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000143134 rps18-003 ENSDARG00000020153 7955 - 19:18309668-18318864 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyENSDART00000143134
Transcript ID Kidney
ENSDART00000143134 1.012±0.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007AA CIL_0007AA_0001 CGP 19:18309520-18340857

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0003735 IEA structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005840 IEA ribosome
GO:0006412 IEA translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000008812 Rps18-001 protein_coding Mus_musculus 0 344
ENSMUST00000072050 Gm5321-001 processed_pseudogene Mus_musculus 0 239
ENSMUST00000074072 Gm10260-201 protein_coding Mus_musculus 0 322
ENSMUST00000077163 Gm11361-001 processed_pseudogene Mus_musculus 0 331
ENSMUST00000080443 Rps18-ps3-201 protein_coding Mus_musculus 0 305
ENSMUST00000116189 Gm12468-001 processed_pseudogene Mus_musculus 1.99993e-41 172
ENSMUST00000119199 Gm6630-001 processed_pseudogene Mus_musculus 0 195
ENSMUST00000120838 Rps18-ps1-001 processed_pseudogene Mus_musculus 0 316
ENSMUST00000121730 Gm15696-001 processed_pseudogene Mus_musculus 0 209
ENSMUST00000172799 Rps18-002 processed_transcript Mus_musculus 0 281
ENSMUST00000173323 Rps18-013 retained_intron Mus_musculus 0 198
ENSMUST00000174175 Rps18-005 retained_intron Mus_musculus 0 244
ENSMUST00000174609 Rps18-006 protein_coding Mus_musculus 0 254
ENSMUST00000174620 Rps18-012 retained_intron Mus_musculus 0 263
ENSMUST00000174745 Rps18-011 processed_transcript Mus_musculus 0 346
ENSMUST00000174758 Rps18-008 retained_intron Mus_musculus 0 279

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