C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L31
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000148984 rpl31-004 ENSDARG00000053365 7955 - 9:57952808-57955310 retained_intron

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyENSDART00000148984
Transcript ID Kidney
ENSDART00000148984 3.963±0.34

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000060994 Rpl31-ps13-001 processed_pseudogene Mus_musculus 4e-23 111
ENSMUST00000085128 Rpl31-ps1-201 processed_pseudogene Mus_musculus 1e-17 94
ENSMUST00000086535 Rpl31-201 protein_coding Mus_musculus 1e-22 111
ENSMUST00000086596 Rpl31-ps9-001 processed_pseudogene Mus_musculus 2e-26 122
ENSMUST00000097040 Rpl31-ps17-001 processed_pseudogene Mus_musculus 4e-23 111
ENSMUST00000116034 Rpl31-ps10-001 processed_pseudogene Mus_musculus 4e-23 111
ENSMUST00000119898 Rpl31-ps11-001 processed_pseudogene Mus_musculus 4e-23 111
ENSMUST00000119957 Rpl31-ps12-001 processed_pseudogene Mus_musculus 3e-24 115
ENSMUST00000120312 Gm12304-001 processed_pseudogene Mus_musculus 0.0000005 58
ENSMUST00000143596 Rpl31-ps14-001 processed_pseudogene Mus_musculus 8e-25 117
ENSMUST00000178079 Rpl31-202 protein_coding Mus_musculus 5e-23 111
ENSMUST00000179954 Rpl31-203 protein_coding Mus_musculus 6e-23 111
ENSMUST00000181130 Rpl31-ps16-001 processed_pseudogene Mus_musculus 2e-21 106
ENSMUST00000181350 Rpl31-ps24-001 processed_pseudogene Mus_musculus 0.00000000006 71
ENSMUST00000181857 Rpl31-ps15-001 processed_pseudogene Mus_musculus 6e-16 88
ENSMUST00000181935 Rpl31-ps8-001 processed_pseudogene Mus_musculus 4e-23 111
ENSMUST00000191562 RP24-82I5.2-001 processed_pseudogene Mus_musculus 0.00000001 64

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