C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: sodium channel, voltage-gated, type I like, alpha b
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000151247 scn1lab-001 ENSDARG00000062744 7955 - 6:10158986-10231330 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartENSDART00000151247
Transcript ID Heart
ENSDART00000151247 0.094±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001518 IEA voltage-gated sodium channel complex
GO:0005216 IEA ion channel activity
GO:0005244 IEA voltage-gated ion channel activity
GO:0005248 IEA voltage-gated sodium channel activity
GO:0005272 IEA sodium channel activity
GO:0005515 IEA protein binding
GO:0006810 IEA transport
GO:0006811 IEA ion transport
GO:0006814 IEA sodium ion transport
GO:0016020 IEA membrane
GO:0016021 IEA integral to membrane
GO:0034765 IEA regulation of ion transmembrane transport
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000077489 Scn1a-004 protein_coding Mus_musculus 0 1247
ENSMUST00000082209 Scn8a-201 protein_coding Mus_musculus 0 675
ENSMUST00000094951 Scn1a-005 protein_coding Mus_musculus 0 1247
ENSMUST00000100063 Scn9a-201 protein_coding Mus_musculus 0 466
ENSMUST00000100064 Scn9a-001 protein_coding Mus_musculus 0 466
ENSMUST00000108908 Scn8a-203 protein_coding Mus_musculus 0 675
ENSMUST00000108909 Scn8a-204 protein_coding Mus_musculus 0 675
ENSMUST00000108910 Scn8a-205 protein_coding Mus_musculus 0 675
ENSMUST00000112354 Scn9a-002 protein_coding Mus_musculus 0 466
ENSMUST00000112366 Scn1a-001 protein_coding Mus_musculus 0 1247
ENSMUST00000112371 Scn1a-201 protein_coding Mus_musculus 0 1247
ENSMUST00000164384 Scn9a-202 protein_coding Mus_musculus 0 466
ENSMUST00000169900 Scn9a-203 protein_coding Mus_musculus 0 466
ENST00000283254 SCN3A-001 protein_coding Homo_sapiens 0 1243
ENST00000283256 SCN2A-001 protein_coding Homo_sapiens 0 1352
ENST00000303354 SCN9A-201 protein_coding Homo_sapiens 0 370
ENST00000303395 SCN1A-001 protein_coding Homo_sapiens 0 514
ENST00000360093 SCN3A-201 protein_coding Homo_sapiens 0 1243
ENST00000375405 SCN1A-002 protein_coding Homo_sapiens 0 688
ENST00000375427 SCN2A-002 protein_coding Homo_sapiens 0 1352
ENST00000375437 SCN2A-201 protein_coding Homo_sapiens 0 1352
ENST00000409050 SCN1A-003 protein_coding Homo_sapiens 0 514
ENST00000409101 SCN3A-002 protein_coding Homo_sapiens 0 1243
ENST00000409435 SCN9A-004 protein_coding Homo_sapiens 0 370
ENST00000409672 SCN9A-001 protein_coding Homo_sapiens 0 370
ENST00000423058 SCN1A-201 protein_coding Homo_sapiens 0 514
ENST00000435607 SCN4A-201 protein_coding Homo_sapiens 0 961
ENST00000440431 SCN3A-004 protein_coding Homo_sapiens 0 529
ENST00000578147 SCN4A-001 protein_coding Homo_sapiens 0 955

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