C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: keratin 25
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000038004 Krt25-001 ENSMUSG00000035831 10090 - 11:99315516-99322951 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000038004
Transcript ID Adipose Bladder Brain Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000038004 0.125±0.09 0.014±0.00 0.084±0.06 0.027±0.01 0.013±0.01 0.021±0.00 1.117±1.10 0.070±0.03 1.712±1.56 0.027±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00056U CIL_00056U_000V CGP 11:99279959-99322951
CIL_00056U CIL_00056U_000Z CGP 11:99315516-99337966

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005882 IEA intermediate filament
GO:0007568 IEA aging
GO:0031069 IMP hair follicle morphogenesis
GO:0042633 IEA hair cycle
GO:0045109 IMP intermediate filament organization
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000167586 KRT14-001 protein_coding Homo_sapiens 0 206
ENST00000254043 KRT15-001 protein_coding Homo_sapiens 0 279
ENST00000300992 KRT17P2-001 transcribed_unprocessed_pseudogene Homo_sapiens 2e-21 108
ENST00000301653 KRT16-001 protein_coding Homo_sapiens 0 241
ENST00000301656 KRT27-001 protein_coding Homo_sapiens 0 942
ENST00000311208 KRT17-001 protein_coding Homo_sapiens 0 191
ENST00000312150 KRT25-001 protein_coding Homo_sapiens 0 1528
ENST00000326333 KRT17P2-002 processed_transcript Homo_sapiens 2e-21 108
ENST00000335552 KRT26-001 protein_coding Homo_sapiens 0 547
ENST00000393974 KRT15-004 protein_coding Homo_sapiens 7e-30 137
ENST00000393976 KRT15-007 protein_coding Homo_sapiens 0 279
ENST00000399211 KRT17P1-001 transcribed_unprocessed_pseudogene Homo_sapiens 1e-23 115
ENST00000415349 KRT18P39-001 processed_pseudogene Homo_sapiens 0.00000000002 75
ENST00000420566 KRT17P3-001 unprocessed_pseudogene Homo_sapiens 4e-33 147
ENST00000427733 KRT18P27-001 processed_pseudogene Homo_sapiens 0.0000001 62
ENST00000436075 KRT18P5-001 processed_pseudogene Homo_sapiens 0.00000000002 75
ENST00000453795 KRT17P6-001 transcribed_unprocessed_pseudogene Homo_sapiens 4e-23 113
ENST00000470335 KLHL22-005 processed_transcript Homo_sapiens 0.00000000001 75
ENST00000491673 KRT17-004 retained_intron Homo_sapiens 4e-25 119
ENST00000493253 KRT17-003 retained_intron Homo_sapiens 3e-35 154
ENST00000577449 KRT17P1-005 retained_intron Homo_sapiens 8e-22 108
ENST00000577817 KRT17-005 protein_coding Homo_sapiens 4e-25 119
ENST00000580363 KRT17P1-003 processed_transcript Homo_sapiens 8e-22 108
ENST00000588319 KRT16-002 retained_intron Homo_sapiens 2e-29 134

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