C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: keratin 16
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000301653 KRT16-001 ENSG00000186832 9606 - 17:41609778-41612753 protein_coding

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000301653
Transcript ID Adipose Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000301653 1.827±0.00 2.181±1.85 0.363±0.00 0.182±0.00 0.036±0.00 0.016±0.00 0.720±0.37 1.963±0.00 59.510±62.68 1.262±0.96 0.145±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00056U CIL_00056U_000N CGP 17:41582279-41615899
CIL_00056U CIL_00056U_000M CGP 17:41609778-41624842

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005200 NAS structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005856 IDA cytoskeleton
GO:0005882 NAS:IEA intermediate filament
GO:0007010 NAS cytoskeleton organization
GO:0007568 IDA aging
GO:0008283 TAS cell proliferation
GO:0008544 TAS epidermis development
GO:0030336 IDA negative regulation of cell migration
GO:0042633 IDA hair cycle
GO:0045104 IEA intermediate filament cytoskeleton organization
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000007280 Krt16-001 protein_coding Mus_musculus 0 1393
ENSMUST00000007272 Krt14-001 protein_coding Mus_musculus 0 1214
ENSMUST00000121423 Gm11597-001 unprocessed_pseudogene Mus_musculus 0 935
ENSMUST00000080893 Krt17-001 protein_coding Mus_musculus 0 918
ENSMUST00000017270 Krt42-001 protein_coding Mus_musculus 0 795
ENSMUST00000137265 Krt14-002 processed_transcript Mus_musculus 0 739
ENSMUST00000107411 Krt15-001 protein_coding Mus_musculus 0 584
ENSMUST00000007275 Krt13-001 protein_coding Mus_musculus 0 488
ENSMUST00000007317 Krt19-001 protein_coding Mus_musculus 0 473
ENSMUST00000107406 Krt42-002 retained_intron Mus_musculus 0 381
ENSMUST00000126460 Krt19-002 processed_transcript Mus_musculus 0 339
ENSMUST00000038004 Krt25-001 protein_coding Mus_musculus 0 241
ENSMUST00000100482 Krt26-001 protein_coding Mus_musculus 2e-32 145
ENSMUST00000148770 Krt26-002 processed_transcript Mus_musculus 5e-23 113

Loading