C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted pseudogene 6378
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000084199 Gm6378-201 ENSMUSG00000062962 10090 - 18:21076667-21077110 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonHeartKidneyLiverOvaryPlacentaTestisENSMUST00000084199
Transcript ID Bladder Brain Colon Heart Kidney Liver Ovary Placenta Testis
ENSMUST00000084199 0.046±0.00 0.019±0.00 0.582±0.04 0.102±0.00 0.334±0.13 0.021±0.00 0.129±0.00 0.699±0.03 0.107±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000314138 RPL27A-001 protein_coding Homo_sapiens 0 525
ENST00000358609 RPL27AP-001 processed_pseudogene Homo_sapiens 0 388
ENST00000439114 AC114755.4-001 processed_pseudogene Homo_sapiens 0 246
ENST00000448912 AC104076.2-001 processed_pseudogene Homo_sapiens 0 337
ENST00000469428 RPL27AP5-001 processed_pseudogene Homo_sapiens 0 436
ENST00000492974 RP11-475C16.1-001 processed_pseudogene Homo_sapiens 0 503
ENST00000524496 RPL27A-007 protein_coding Homo_sapiens 0 448
ENST00000526562 RPL27A-009 protein_coding Homo_sapiens 0 396
ENST00000530022 RPL27A-008 protein_coding Homo_sapiens 0 521
ENST00000530913 RPL27A-011 protein_coding Homo_sapiens 0 396
ENST00000531978 RPL27A-004 protein_coding Homo_sapiens 0 355
ENST00000534599 RPL27A-005 nonsense_mediated_decay Homo_sapiens 0 448

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