C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L27a pseudogene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000358609 RPL27AP-001 ENSG00000215467 9606 + 20:43652523-43653291 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000358609
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000358609 0.918±0.00 1.047±0.00 0.618±0.00 0.237±0.00 1.129±0.00 0.282±0.00 0.271±0.00 0.235±0.00 0.835±0.00 0.501±0.00 0.069±0.00 0.489±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00044J CIL_00044J_0001 CGP 20:43590931-43716496

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000077389 Gm7536-201 protein_coding Mus_musculus 0 440
ENSMUST00000143107 Rpl27a-001 protein_coding Mus_musculus 0 440
ENSMUST00000084017 Gm5908-201 processed_pseudogene Mus_musculus 0 431
ENSMUST00000170338 RP23-323H18.3-001 processed_pseudogene Mus_musculus 0 429
ENSMUST00000117531 Gm14044-001 processed_pseudogene Mus_musculus 0 418
ENSMUST00000075382 Rpl27a-ps1-201 processed_pseudogene Mus_musculus 0 412
ENSMUST00000122360 Gm13981-001 processed_pseudogene Mus_musculus 0 396
ENSMUST00000084199 Gm6378-201 processed_pseudogene Mus_musculus 0 388
ENSMUST00000122416 Gm15727-001 processed_pseudogene Mus_musculus 0 372
ENSMUST00000118191 Gm8213-001 processed_pseudogene Mus_musculus 0 368
ENSMUST00000121260 Gm14407-001 processed_pseudogene Mus_musculus 0 357
ENSMUST00000053298 Rpl27a-005 retained_intron Mus_musculus 0 355
ENSMUST00000122320 Gm14439-001 processed_pseudogene Mus_musculus 0 340
ENSMUST00000117666 Gm12218-001 processed_pseudogene Mus_musculus 0 333
ENSMUST00000156921 Rpl27a-003 nonsense_mediated_decay Mus_musculus 0 250
ENSMUST00000132877 Rpl27a-002 retained_intron Mus_musculus 3e-35 152
ENSMUST00000119552 Gm13804-001 processed_pseudogene Mus_musculus 3e-30 135

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