C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S19, pseudogene 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000116174 Rps19-ps3-001 ENSMUSG00000080059 10090 - 4:147821777-147822202 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000116174
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000116174 1.591±0.45 1.491±0.00 0.933±0.19 0.718±0.43 0.459±0.09 1.480±0.32 0.748±0.11 1.267±0.71 1.248±0.42 1.712±0.57 2.609±1.74 0.835±0.40

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087H CIL_00087H_0002 VISTA 4:147665245-148272946

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000221975 RPS19-005 protein_coding Homo_sapiens 0 564
ENST00000405355 RP11-346C16.4-001 processed_pseudogene Homo_sapiens 0 420
ENST00000415286 RPS19P1-001 processed_pseudogene Homo_sapiens 0 496
ENST00000455650 RP11-445N18.3-001 processed_pseudogene Homo_sapiens 0 383
ENST00000457967 RP11-389O22.4-001 processed_pseudogene Homo_sapiens 0 335
ENST00000477321 RP11-289K10.1-001 processed_pseudogene Homo_sapiens 0 436
ENST00000480487 RPS19P3-001 processed_pseudogene Homo_sapiens 0 496
ENST00000593863 RPS19-006 protein_coding Homo_sapiens 0 566
ENST00000598261 RPS19-007 protein_coding Homo_sapiens 0 287
ENST00000598399 RPS19-008 nonsense_mediated_decay Homo_sapiens 0 213
ENST00000598466 RPS19-004 retained_intron Homo_sapiens 0 213
ENST00000598742 RPS19-001 protein_coding Homo_sapiens 0 566
ENST00000600467 RPS19-002 protein_coding Homo_sapiens 0 278
ENST00000601492 RPS19-003 protein_coding Homo_sapiens 0 213

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