C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 11892
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117711 Gm11892-001 ENSMUSG00000083154 10090 + 4:24238100-24239301 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainTestisENSMUST00000117711
Transcript ID Brain Testis
ENSMUST00000117711 1.048±0.31 0.085±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007MX CIL_0007MX_0004 UCNEbase 4:22803646-24698662
CIL_00093S CIL_00093S_0002 VISTA 4:23683452-24284307
CIL_0008G2 CIL_0008G2_0002 VISTA 4:23718817-24320246
CIL_0008WV CIL_0008WV_0002 VISTA 4:23851152-24452086
CIL_0008CQ CIL_0008CQ_0002 VISTA 4:23912230-24515243
CIL_0007TH CIL_0007TH_0002 VISTA 4:24128853-24730297

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000066859 tubb4b-001 protein_coding Danio_rerio 0 732
ENSDART00000131187 tubb4b-201 protein_coding Danio_rerio 0 726
ENSDART00000055380 tubb5-201 protein_coding Danio_rerio 0 652
ENSDART00000075040 tubb1-001 protein_coding Danio_rerio 0 261
ENST00000248151 TUBBP1-001 transcribed_processed_pseudogene Homo_sapiens 0 1055
ENST00000315491 TUBB3-001 protein_coding Homo_sapiens 0 662
ENST00000327892 TUBB-001 protein_coding Homo_sapiens 0 1142
ENST00000330914 TUBB-002 protein_coding Homo_sapiens 0 1142
ENST00000383564 TUBB-001 protein_coding Homo_sapiens 0 1142
ENST00000396384 TUBB-004 protein_coding Homo_sapiens 0 1142
ENST00000396389 TUBB-003 protein_coding Homo_sapiens 0 1142
ENST00000400530 TUBB-004 protein_coding Homo_sapiens 0 1142
ENST00000400531 TUBB-002 protein_coding Homo_sapiens 0 1142
ENST00000400534 TUBB-003 protein_coding Homo_sapiens 0 1142
ENST00000412136 TUBB-003 protein_coding Homo_sapiens 0 1142
ENST00000413547 TUBB-002 protein_coding Homo_sapiens 0 1142
ENST00000416519 TUBBP6-001 processed_pseudogene Homo_sapiens 0 896
ENST00000419551 TUBB-003 protein_coding Homo_sapiens 0 1142
ENST00000419792 TUBB-001 protein_coding Homo_sapiens 0 1142
ENST00000420400 TUBB-003 protein_coding Homo_sapiens 0 1142
ENST00000420618 TUBB-004 protein_coding Homo_sapiens 0 1142
ENST00000421473 TUBB-001 protein_coding Homo_sapiens 0 1142
ENST00000422650 TUBB-001 protein_coding Homo_sapiens 0 1142
ENST00000422674 TUBB-001 protein_coding Homo_sapiens 0 1142
ENST00000424734 TUBB-003 protein_coding Homo_sapiens 0 1142
ENST00000425102 TUBB-004 protein_coding Homo_sapiens 0 1142
ENST00000425136 TUBB-003 protein_coding Homo_sapiens 0 1142
ENST00000426754 TUBB-003 protein_coding Homo_sapiens 0 1142
ENST00000427480 TUBB-002 protein_coding Homo_sapiens 0 1142
ENST00000432462 TUBB-001 protein_coding Homo_sapiens 0 1142
ENST00000435546 TUBB-002 protein_coding Homo_sapiens 0 1142
ENST00000436335 TUBB-002 protein_coding Homo_sapiens 0 1142
ENST00000436628 TUBB-001 protein_coding Homo_sapiens 0 1142
ENST00000437490 TUBB-002 protein_coding Homo_sapiens 0 1142
ENST00000444441 TUBB-004 protein_coding Homo_sapiens 0 1142
ENST00000446385 TUBB-004 protein_coding Homo_sapiens 0 1142
ENST00000453350 TUBB-004 protein_coding Homo_sapiens 0 1142
ENST00000454454 TUBB-002 protein_coding Homo_sapiens 0 1142
ENST00000454620 TUBB-004 protein_coding Homo_sapiens 0 1142
ENST00000518096 TUBBP1-002 processed_transcript Homo_sapiens 0 1055
ENST00000554444 TUBB3-002 protein_coding Homo_sapiens 0 662
ENST00000555609 TUBB3-013 nonsense_mediated_decay Homo_sapiens 0 662
ENST00000555810 TUBB3-004 protein_coding Homo_sapiens 0 385
ENST00000556536 TUBB3-012 nonsense_mediated_decay Homo_sapiens 0 305
ENST00000556922 TUBB3-001 protein_coding Homo_sapiens 0 662

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