C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin, beta pseudogene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000518096 TUBBP1-002 ENSG00000127589 9606 + 8:30351873-30353518 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000518096
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000518096 0.321±0.00 0.175±0.00 0.062±0.03 0.185±0.00 0.157±0.00 0.170±0.00 0.301±0.00 0.072±0.00 0.991±0.00 0.189±0.00 0.151±0.05 0.102±0.06 0.291±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008D0 CIL_0008D0_0001 VISTA 8:29977526-30581393
CIL_0008IH CIL_0008IH_0001 VISTA 8:30111104-30714589

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000001566 Tubb5-001 protein_coding Mus_musculus 0 1760
ENSMUST00000056427 Tubb2a-201 protein_coding Mus_musculus 0 1271
ENSMUST00000075774 Tubb2b-201 protein_coding Mus_musculus 0 1223
ENSMUST00000043584 Tubb4b-001 protein_coding Mus_musculus 0 1136
ENSDART00000143702 zgc:123194-001 protein_coding Danio_rerio 0 1122
ENSDART00000055380 tubb5-201 protein_coding Danio_rerio 0 1107
ENSMUST00000179460 Tubb4b-ps1-201 protein_coding Mus_musculus 0 1101
ENSDART00000061149 zgc:55461-001 protein_coding Danio_rerio 0 1057
ENSMUST00000117711 Gm11892-001 processed_pseudogene Mus_musculus 0 1055
ENSMUST00000001513 Tubb6-201 protein_coding Mus_musculus 0 1022
ENSMUST00000173253 Tubb5-004 retained_intron Mus_musculus 0 787
ENSDART00000075040 tubb1-001 protein_coding Danio_rerio 0 614
ENSMUST00000134978 Tubb5-003 protein_coding Mus_musculus 0 322
ENSMUST00000156050 Tubb5-002 retained_intron Mus_musculus 0 235
ENSMUST00000143349 Caprin1-016 protein_coding Mus_musculus 0.000000000006 77

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