C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin, beta 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000055380 tubb5-201 ENSDARG00000037997 7955 + 16:11935861-11944510 protein_coding

Danio rerio EnsemblZv9

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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000055380
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000055380 64.988±20.64 0.613±0.29 3.535±0.85 0.269±0.00 2.177±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001X1 CIL_0001X1_0001 CGP 16:11904517-11944510
CIL_0005ET CIL_0005ET_0001 CGP 16:11935861-11963017

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003924 IEA GTPase activity
GO:0005198 NAS structural molecule activity
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005525 IEA GTP binding
GO:0005737 IEA cytoplasm
GO:0005856 NAS cytoskeleton
GO:0005874 IEA microtubule
GO:0006184 IEA GTP catabolic process
GO:0007017 IEA microtubule-based process
GO:0043234 IEA protein complex
GO:0051258 IEA protein polymerization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000001513 Tubb6-201 protein_coding Mus_musculus 0 1168
ENSMUST00000001566 Tubb5-001 protein_coding Mus_musculus 0 1184
ENSMUST00000043584 Tubb4b-001 protein_coding Mus_musculus 0 1151
ENSMUST00000056427 Tubb2a-201 protein_coding Mus_musculus 0 1240
ENSMUST00000071134 Tubb3-001 protein_coding Mus_musculus 0 1234
ENSMUST00000071135 Tubb4a-201 protein_coding Mus_musculus 0 1182
ENSMUST00000075774 Tubb2b-201 protein_coding Mus_musculus 0 1279
ENSMUST00000117711 Gm11892-001 processed_pseudogene Mus_musculus 0 652
ENSMUST00000160140 Gm16165-001 processed_pseudogene Mus_musculus 0 532
ENSMUST00000179460 Tubb4b-ps1-201 protein_coding Mus_musculus 0 1092
ENSMUST00000187481 RP23-8J15.8-001 processed_pseudogene Mus_musculus 0 992
ENST00000217133 TUBB1-001 protein_coding Homo_sapiens 0 538
ENST00000248151 TUBBP1-001 transcribed_processed_pseudogene Homo_sapiens 0 1099
ENST00000259818 TUBB2B-001 protein_coding Homo_sapiens 0 1295
ENST00000264071 TUBB4A-001 protein_coding Homo_sapiens 0 1314
ENST00000290377 TUBBP5-002 processed_transcript Homo_sapiens 0 874
ENST00000315491 TUBB3-001 protein_coding Homo_sapiens 0 1218
ENST00000327892 TUBB-001 protein_coding Homo_sapiens 0 1240
ENST00000330914 TUBB-002 protein_coding Homo_sapiens 0 1177
ENST00000333628 TUBB2A-001 protein_coding Homo_sapiens 0 1327
ENST00000340384 TUBB4B-001 protein_coding Homo_sapiens 0 1295
ENST00000383564 TUBB-001 protein_coding Homo_sapiens 0 1240
ENST00000396384 TUBB-004 protein_coding Homo_sapiens 0 1182
ENST00000396389 TUBB-003 protein_coding Homo_sapiens 0 1173
ENST00000400530 TUBB-004 protein_coding Homo_sapiens 0 1182
ENST00000400531 TUBB-002 protein_coding Homo_sapiens 0 1177
ENST00000400534 TUBB-003 protein_coding Homo_sapiens 0 1173
ENST00000405796 TUBB3P1-001 processed_pseudogene Homo_sapiens 0 754
ENST00000412136 TUBB-003 protein_coding Homo_sapiens 0 1173
ENST00000413547 TUBB-002 protein_coding Homo_sapiens 0 1177
ENST00000416519 TUBBP6-001 processed_pseudogene Homo_sapiens 0 861
ENST00000419551 TUBB-003 protein_coding Homo_sapiens 0 1173
ENST00000419792 TUBB-001 protein_coding Homo_sapiens 0 1240
ENST00000420400 TUBB-003 protein_coding Homo_sapiens 0 1173
ENST00000420618 TUBB-004 protein_coding Homo_sapiens 0 1182
ENST00000421473 TUBB-001 protein_coding Homo_sapiens 0 1240
ENST00000422650 TUBB-001 protein_coding Homo_sapiens 0 1240
ENST00000422674 TUBB-001 protein_coding Homo_sapiens 0 1240
ENST00000424734 TUBB-003 protein_coding Homo_sapiens 0 1173
ENST00000425102 TUBB-004 protein_coding Homo_sapiens 0 1182
ENST00000425136 TUBB-003 protein_coding Homo_sapiens 0 1173
ENST00000426754 TUBB-003 protein_coding Homo_sapiens 0 1173
ENST00000427480 TUBB-002 protein_coding Homo_sapiens 0 1177
ENST00000432462 TUBB-001 protein_coding Homo_sapiens 0 1240
ENST00000435546 TUBB-002 protein_coding Homo_sapiens 0 1177
ENST00000436335 TUBB-002 protein_coding Homo_sapiens 0 1177
ENST00000436628 TUBB-001 protein_coding Homo_sapiens 0 1240
ENST00000437490 TUBB-002 protein_coding Homo_sapiens 0 1177
ENST00000437546 TUBB4BP3-001 processed_pseudogene Homo_sapiens 0 196
ENST00000444441 TUBB-004 protein_coding Homo_sapiens 0 1182
ENST00000446385 TUBB-004 protein_coding Homo_sapiens 0 1182
ENST00000453350 TUBB-004 protein_coding Homo_sapiens 0 1182
ENST00000454454 TUBB-002 protein_coding Homo_sapiens 0 1177
ENST00000454620 TUBB-004 protein_coding Homo_sapiens 0 1182
ENST00000473006 TUBB2B-002 processed_transcript Homo_sapiens 0 1247
ENST00000489942 TUBB2A-002 processed_transcript Homo_sapiens 0 305
ENST00000508529 TUBBP5-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 874
ENST00000518096 TUBBP1-002 processed_transcript Homo_sapiens 0 1107
ENST00000540257 TUBB4A-201 protein_coding Homo_sapiens 0 1314
ENST00000554444 TUBB3-002 protein_coding Homo_sapiens 0 1155
ENST00000555609 TUBB3-013 nonsense_mediated_decay Homo_sapiens 0 1134
ENST00000556922 TUBB3-001 protein_coding Homo_sapiens 0 1155
ENST00000563927 TUBB8P7-001 processed_transcript Homo_sapiens 0 739
ENST00000564451 TUBB8P7-004 processed_transcript Homo_sapiens 0 739
ENST00000567207 TUBB8P7-002 processed_transcript Homo_sapiens 0 845
ENST00000567960 TUBB8P7-003 polymorphic_pseudogene Homo_sapiens 0 845
ENST00000604929 TUBB4B-002 retained_intron Homo_sapiens 0 1068

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