C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin, beta class I
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000327892 TUBB-001 ENSG00000196230 9606 + 6:30720201-30725426 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000327892
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000327892 81.290±0.00 131.492±0.00 9.064±0.00 45.496±11.77 64.495±35.28 50.082±23.14 26.814±15.99 57.150±20.81 45.526±11.83 69.893±45.81 31.604±20.28 194.447±102.19 242.115±49.13 63.675±29.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090O CIL_00090O_0001 VISTA 6:30539989-31144784

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000086 TAS G2/M transition of mitotic cell cycle
GO:0000278 TAS mitotic cell cycle
GO:0003924 IEA GTPase activity
GO:0005198 TAS structural molecule activity
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005634 IDA nucleus
GO:0005641 IDA nuclear envelope lumen
GO:0005829 TAS cytosol
GO:0005856 TAS cytoskeleton
GO:0005874 TAS microtubule
GO:0006184 IEA GTP catabolic process
GO:0006928 TAS cellular component movement
GO:0007017 TAS microtubule-based process
GO:0009987 IDA cellular process
GO:0019904 IEA protein domain specific binding
GO:0030705 TAS cytoskeleton-dependent intracellular transport
GO:0032403 IEA protein complex binding
GO:0032794 IEA GTPase activating protein binding
GO:0036464 IDA cytoplasmic ribonucleoprotein granule
GO:0042267 NAS natural killer cell mediated cytotoxicity
GO:0042288 IDA MHC class I protein binding
GO:0043234 IEA protein complex
GO:0044297 IDA cell body
GO:0051225 IEA spindle assembly
GO:0051258 IEA protein polymerization
GO:0051301 TAS cell division
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000001566 Tubb5-001 protein_coding Mus_musculus 0 1989
ENSMUST00000056427 Tubb2a-201 protein_coding Mus_musculus 0 1382
ENSMUST00000071135 Tubb4a-201 protein_coding Mus_musculus 0 1334
ENSMUST00000075774 Tubb2b-201 protein_coding Mus_musculus 0 1334
ENSMUST00000071134 Tubb3-001 protein_coding Mus_musculus 0 1275
ENSDART00000041279 tubb4b-001 protein_coding Danio_rerio 0 1260
ENSMUST00000043584 Tubb4b-001 protein_coding Mus_musculus 0 1242
ENSDART00000055380 tubb5-201 protein_coding Danio_rerio 0 1240
ENSDART00000143702 zgc:123194-001 protein_coding Danio_rerio 0 1227
ENSMUST00000179460 Tubb4b-ps1-201 protein_coding Mus_musculus 0 1218
ENSMUST00000117711 Gm11892-001 processed_pseudogene Mus_musculus 0 1142
ENSMUST00000001513 Tubb6-201 protein_coding Mus_musculus 0 1138
ENSDART00000061149 zgc:55461-001 protein_coding Danio_rerio 0 1123
ENSMUST00000187481 RP23-8J15.8-001 processed_pseudogene Mus_musculus 0 1116
ENSMUST00000173253 Tubb5-004 retained_intron Mus_musculus 0 859
ENSDART00000075040 tubb1-001 protein_coding Danio_rerio 0 697
ENSDART00000147110 tubb4b-002 processed_transcript Danio_rerio 0 636
ENSMUST00000134978 Tubb5-003 protein_coding Mus_musculus 0 340
ENSMUST00000156050 Tubb5-002 retained_intron Mus_musculus 0 267

Loading