C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin, beta class I
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000396389 TUBB-003 ENSG00000196230 9606 + 6:30721667-30725426 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090O CIL_00090O_0001 VISTA 6:30539989-31144784

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005525 IEA GTP binding
GO:0005874 IEA microtubule
GO:0006184 IEA GTP catabolic process
GO:0007017 IEA microtubule-based process
GO:0043234 IEA protein complex
GO:0051258 IEA protein polymerization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000001566 Tubb5-001 protein_coding Mus_musculus 0 1882
ENSMUST00000056427 Tubb2a-201 protein_coding Mus_musculus 0 1312
ENSMUST00000071135 Tubb4a-201 protein_coding Mus_musculus 0 1275
ENSMUST00000075774 Tubb2b-201 protein_coding Mus_musculus 0 1264
ENSMUST00000071134 Tubb3-001 protein_coding Mus_musculus 0 1203
ENSDART00000041279 tubb4b-001 protein_coding Danio_rerio 0 1194
ENSDART00000143702 zgc:123194-001 protein_coding Danio_rerio 0 1179
ENSMUST00000043584 Tubb4b-001 protein_coding Mus_musculus 0 1173
ENSDART00000055380 tubb5-201 protein_coding Danio_rerio 0 1173
ENSMUST00000179460 Tubb4b-ps1-201 protein_coding Mus_musculus 0 1153
ENSMUST00000117711 Gm11892-001 processed_pseudogene Mus_musculus 0 1142
ENSMUST00000001513 Tubb6-201 protein_coding Mus_musculus 0 1070
ENSMUST00000187481 RP23-8J15.8-001 processed_pseudogene Mus_musculus 0 1062
ENSDART00000061149 zgc:55461-001 protein_coding Danio_rerio 0 1062
ENSMUST00000173253 Tubb5-004 retained_intron Mus_musculus 0 857
ENSDART00000075040 tubb1-001 protein_coding Danio_rerio 0 676
ENSDART00000147110 tubb4b-002 processed_transcript Danio_rerio 0 636
ENSMUST00000134978 Tubb5-003 protein_coding Mus_musculus 0 340

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