C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L30, pseudogene 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117928 Rpl30-ps3-001 ENSMUSG00000080873 10090 - 2:90747616-90747963 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000117928
Transcript ID Adrenal Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000117928 0.474±0.01 0.061±0.02 0.300±0.07 0.560±0.20 0.587±0.21 0.539±0.29 0.398±0.27 0.397±0.08 0.154±0.00 0.132±0.00 0.199±0.05 0.247±0.09

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000287038 RPL30-001 protein_coding Homo_sapiens 0 483
ENST00000396070 RPL30-009 protein_coding Homo_sapiens 0 215
ENST00000414021 RPL30P2-001 processed_pseudogene Homo_sapiens 0 259
ENST00000418873 RPL30P13-001 processed_pseudogene Homo_sapiens 0 344
ENST00000429309 RPL30P4-001 processed_pseudogene Homo_sapiens 0 401
ENST00000480085 RP1-249H1.3-001 processed_pseudogene Homo_sapiens 0 351
ENST00000482744 RPL30P14-001 processed_pseudogene Homo_sapiens 0 427
ENST00000517489 RPL30-004 retained_intron Homo_sapiens 0 387
ENST00000518164 RPL30-002 processed_transcript Homo_sapiens 0 215
ENST00000518850 RPL30-010 nonsense_mediated_decay Homo_sapiens 0 270
ENST00000520998 RPL30-006 retained_intron Homo_sapiens 0 220
ENST00000521112 RPL30-005 retained_intron Homo_sapiens 0 195
ENST00000521291 RPL30-007 protein_coding Homo_sapiens 0 483
ENST00000521534 RPL30-013 retained_intron Homo_sapiens 0 272
ENST00000521726 RPL30-003 protein_coding Homo_sapiens 0 475
ENST00000523172 RPL30-008 protein_coding Homo_sapiens 0 270

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