C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000480085 RP1-249H1.3-001 ENSG00000219758 9606 + 6:113839279-113839621 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverLungMuscleENST00000480085
Transcript ID Brain Heart Kidney Liver Lung Muscle
ENST00000480085 0.041±0.00 0.179±0.00 0.163±0.00 0.070±0.00 0.110±0.00 0.172±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000009039 Rpl30-002 protein_coding Mus_musculus 0 381
ENSMUST00000079735 Rpl30-001 protein_coding Mus_musculus 0 381
ENSMUST00000122265 Rpl30-ps9-001 processed_pseudogene Mus_musculus 0 379
ENSMUST00000117119 Rpl30-ps10-001 processed_pseudogene Mus_musculus 0 377
ENSMUST00000142643 Rpl30-005 processed_transcript Mus_musculus 0 377
ENSMUST00000119767 Rpl30-ps1-001 processed_pseudogene Mus_musculus 0 374
ENSMUST00000118307 Gm12191-001 processed_pseudogene Mus_musculus 0 374
ENSMUST00000076166 Rpl30-ps8-201 processed_pseudogene Mus_musculus 0 368
ENSMUST00000118664 Gm7429-001 processed_pseudogene Mus_musculus 0 363
ENSMUST00000117928 Rpl30-ps3-001 processed_pseudogene Mus_musculus 0 351
ENSMUST00000071536 Gm6570-201 processed_pseudogene Mus_musculus 0 350
ENSMUST00000119573 Gm9703-001 processed_pseudogene Mus_musculus 0 342
ENSMUST00000096279 Gm10343-201 processed_pseudogene Mus_musculus 0 337
ENSMUST00000160070 Rpl30-ps2-001 processed_pseudogene Mus_musculus 0 300
ENSMUST00000122391 Gm14530-001 processed_pseudogene Mus_musculus 0 257
ENSMUST00000136653 Rpl30-006 retained_intron Mus_musculus 0 217
ENSMUST00000135417 Rpl30-003 retained_intron Mus_musculus 1.00053e-42 176
ENSMUST00000117313 Gm13714-001 processed_pseudogene Mus_musculus 7e-35 150

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