C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000464444 AD000092.3-001 ENSG00000240616 9606 + 19:12894133-12894880 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000464444
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000464444 1.090±0.00 2.266±0.00 1.012±0.00 0.833±0.00 1.005±0.07 1.919±1.18 0.158±0.10 0.607±0.49 0.285±0.05 0.687±0.34 0.248±0.00 0.387±0.07 0.134±0.01 1.094±0.98

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VV CIL_0007VV_0001 VISTA 19:12752697-13356541
CIL_0007ZV CIL_0007ZV_0001 VISTA 19:12767682-13372012

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000118499 Rps6-ps4-001 processed_pseudogene Mus_musculus 0 688
ENSMUST00000074205 Rps6-ps1-201 processed_pseudogene Mus_musculus 0 688
ENSMUST00000102814 Rps6-001 protein_coding Mus_musculus 0 688
ENSMUST00000121853 Gm11263-001 processed_pseudogene Mus_musculus 0 686
ENSMUST00000100510 Gm16409-201 processed_pseudogene Mus_musculus 0 682
ENSMUST00000120762 Gm8172-001 processed_pseudogene Mus_musculus 0 676
ENSMUST00000118010 Rps6-ps3-001 processed_pseudogene Mus_musculus 0 649
ENSMUST00000122061 Gm14138-001 processed_pseudogene Mus_musculus 0 643
ENSMUST00000079841 Rps6-ps2-201 processed_pseudogene Mus_musculus 0 638
ENSMUST00000121487 Gm11604-001 processed_pseudogene Mus_musculus 0 599
ENSMUST00000118824 Gm12242-001 processed_pseudogene Mus_musculus 0 560
ENSMUST00000118220 Gm8145-001 processed_pseudogene Mus_musculus 0 558
ENSMUST00000118255 Gm14172-001 processed_pseudogene Mus_musculus 1.96182e-44 183
ENSMUST00000118747 Gm15233-001 processed_pseudogene Mus_musculus 1e-31 141
ENSMUST00000165520 Gm9006-001 processed_pseudogene Mus_musculus 3e-27 126
ENSMUST00000117178 Gm14481-001 processed_pseudogene Mus_musculus 0.000000002 68
ENSMUST00000183833 Gm27225-001 processed_pseudogene Mus_musculus 0.000000006 66

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