C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000416267 RP11-349N19.2-001 ENSG00000179101 9606 + X:123514473-123514872 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastLiverLungMuscleOvaryTestisENST00000416267
Transcript ID Adipose Adrenal Brain Breast Liver Lung Muscle Ovary Testis
ENST00000416267 0.159±0.00 0.055±0.00 0.062±0.00 0.059±0.00 0.051±0.00 0.054±0.00 0.049±0.00 0.127±0.00 0.102±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001U7 CIL_0001U7_0001 CGP X:123184153-123733056

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000162814 H3f3a-003 protein_coding Mus_musculus 0 614
ENSMUST00000161308 H3f3a-001 protein_coding Mus_musculus 0 614
ENSMUST00000119459 H3f3c-001 processed_pseudogene Mus_musculus 0 603
ENSMUST00000179671 Gm10257-201 processed_pseudogene Mus_musculus 0 597
ENSMUST00000077016 Gm6421-201 processed_pseudogene Mus_musculus 0 597
ENSMUST00000081026 H3f3a-006 protein_coding Mus_musculus 0 595
ENSMUST00000119560 Gm12657-001 processed_pseudogene Mus_musculus 0 592
ENSMUST00000119546 H3f3a-ps1-001 processed_pseudogene Mus_musculus 0 592
ENSMUST00000119544 H3f3a-ps2-001 processed_pseudogene Mus_musculus 0 592
ENSMUST00000121118 Gm13529-001 processed_pseudogene Mus_musculus 0 566
ENSMUST00000159789 H3f3a-007 protein_coding Mus_musculus 0 540
ENSMUST00000120752 Gm3835-001 processed_pseudogene Mus_musculus 0 536
ENSMUST00000171334 Gm4938-201 processed_pseudogene Mus_musculus 0 536
ENSMUST00000179566 Gm6132-201 processed_pseudogene Mus_musculus 0 525
ENSMUST00000169993 Gm17136-001 processed_pseudogene Mus_musculus 0 520
ENSMUST00000121683 Gm12950-001 processed_pseudogene Mus_musculus 0 503
ENSMUST00000183321 Gm26980-001 processed_pseudogene Mus_musculus 0 490
ENSMUST00000179046 Gm7426-201 pseudogene Mus_musculus 0 481
ENSMUST00000121719 Gm12271-001 processed_pseudogene Mus_musculus 0 479
ENSMUST00000117894 Gm14529-001 processed_pseudogene Mus_musculus 0 477
ENSMUST00000120136 Gm15763-001 processed_pseudogene Mus_musculus 0 472
ENSMUST00000186232 RP23-128A11.4-001 processed_pseudogene Mus_musculus 0 429
ENSMUST00000159441 H3f3a-005 retained_intron Mus_musculus 0 414
ENSMUST00000118436 Gm13349-001 processed_pseudogene Mus_musculus 0 411
ENSMUST00000121637 Gm14383-001 processed_pseudogene Mus_musculus 0 403
ENSMUST00000120730 Gm15220-001 processed_pseudogene Mus_musculus 0 385
ENSMUST00000116640 Gm14807-001 processed_pseudogene Mus_musculus 0 377
ENSMUST00000077630 RP23-249L15.2-001 processed_pseudogene Mus_musculus 0 333
ENSMUST00000119660 Gm8757-001 processed_pseudogene Mus_musculus 0 329
ENSMUST00000174739 Gm20545-001 processed_pseudogene Mus_musculus 0 302
ENSMUST00000118617 Gm12513-001 processed_pseudogene Mus_musculus 0 292
ENSMUST00000137042 Gm15905-001 processed_pseudogene Mus_musculus 0 250
ENSMUST00000162118 H3f3a-002 protein_coding Mus_musculus 0 241
ENSMUST00000159685 H3f3a-004 protein_coding Mus_musculus 0 235

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