C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000321285 RP11-402J6.3-001 ENSG00000250966 9606 + 4:112564988-112565398 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastHeartKidneyLungMuscleOvaryTestisENST00000321285
Transcript ID Adrenal Breast Heart Kidney Lung Muscle Ovary Testis
ENST00000321285 0.094±0.00 0.110±0.06 0.127±0.00 0.120±0.07 0.310±0.00 0.081±0.00 0.977±0.85 0.086±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008WR CIL_0008WR_0001 VISTA 4:112221234-112822374

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000119546 H3f3a-ps1-001 processed_pseudogene Mus_musculus 0 612
ENSMUST00000162814 H3f3a-003 protein_coding Mus_musculus 0 606
ENSMUST00000161308 H3f3a-001 protein_coding Mus_musculus 0 606
ENSMUST00000179671 Gm10257-201 processed_pseudogene Mus_musculus 0 601
ENSMUST00000119544 H3f3a-ps2-001 processed_pseudogene Mus_musculus 0 595
ENSMUST00000119459 H3f3c-001 processed_pseudogene Mus_musculus 0 590
ENSMUST00000077016 Gm6421-201 processed_pseudogene Mus_musculus 0 590
ENSMUST00000081026 H3f3a-006 protein_coding Mus_musculus 0 586
ENSMUST00000119560 Gm12657-001 processed_pseudogene Mus_musculus 0 584
ENSMUST00000121118 Gm13529-001 processed_pseudogene Mus_musculus 0 560
ENSMUST00000179566 Gm6132-201 processed_pseudogene Mus_musculus 0 556
ENSMUST00000159789 H3f3a-007 protein_coding Mus_musculus 0 544
ENSMUST00000169993 Gm17136-001 processed_pseudogene Mus_musculus 0 540
ENSMUST00000120752 Gm3835-001 processed_pseudogene Mus_musculus 0 538
ENSMUST00000171334 Gm4938-201 processed_pseudogene Mus_musculus 0 516
ENSMUST00000121719 Gm12271-001 processed_pseudogene Mus_musculus 0 508
ENSMUST00000121683 Gm12950-001 processed_pseudogene Mus_musculus 0 501
ENSMUST00000183321 Gm26980-001 processed_pseudogene Mus_musculus 0 501
ENSMUST00000120136 Gm15763-001 processed_pseudogene Mus_musculus 0 475
ENSMUST00000117894 Gm14529-001 processed_pseudogene Mus_musculus 0 466
ENSMUST00000186232 RP23-128A11.4-001 processed_pseudogene Mus_musculus 0 425
ENSMUST00000159441 H3f3a-005 retained_intron Mus_musculus 0 418
ENSMUST00000118436 Gm13349-001 processed_pseudogene Mus_musculus 0 407
ENSMUST00000116640 Gm14807-001 processed_pseudogene Mus_musculus 0 379
ENSMUST00000120730 Gm15220-001 processed_pseudogene Mus_musculus 0 377
ENSMUST00000121637 Gm14383-001 processed_pseudogene Mus_musculus 0 372
ENSMUST00000077630 RP23-249L15.2-001 processed_pseudogene Mus_musculus 0 333
ENSMUST00000119660 Gm8757-001 processed_pseudogene Mus_musculus 0 307
ENSMUST00000118617 Gm12513-001 processed_pseudogene Mus_musculus 0 285
ENSMUST00000174739 Gm20545-001 processed_pseudogene Mus_musculus 0 283
ENSMUST00000162118 H3f3a-002 protein_coding Mus_musculus 0 252
ENSMUST00000159685 H3f3a-004 protein_coding Mus_musculus 0 248
ENSMUST00000137042 Gm15905-001 processed_pseudogene Mus_musculus 0 237
ENSMUST00000118841 Gm14669-001 processed_pseudogene Mus_musculus 0 193
ENSMUST00000119709 Gm14937-001 processed_pseudogene Mus_musculus 3e-39 165

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