C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: H3 histone, family 3A, pseudogene 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000369387 H3F3AP4-001 ENSG00000235655 9606 + 2:174719908-174720318 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungOvaryENST00000369387
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary
ENST00000369387 0.826±0.00 0.775±0.00 2.156±0.00 1.507±0.00 0.783±0.00 1.793±0.00 1.709±0.00 0.631±0.00 1.295±0.79

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001H9 CIL_0001H9_0001 CGP 2:174559572-174764472

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000162814 H3f3a-003 protein_coding Mus_musculus 0 671
ENSMUST00000161308 H3f3a-001 protein_coding Mus_musculus 0 671
ENSMUST00000119459 H3f3c-001 processed_pseudogene Mus_musculus 0 654
ENSMUST00000179671 Gm10257-201 processed_pseudogene Mus_musculus 0 654
ENSMUST00000077016 Gm6421-201 processed_pseudogene Mus_musculus 0 654
ENSMUST00000081026 H3f3a-006 protein_coding Mus_musculus 0 651
ENSMUST00000119544 H3f3a-ps2-001 processed_pseudogene Mus_musculus 0 649
ENSMUST00000119546 H3f3a-ps1-001 processed_pseudogene Mus_musculus 0 647
ENSMUST00000119560 Gm12657-001 processed_pseudogene Mus_musculus 0 643
ENSMUST00000121118 Gm13529-001 processed_pseudogene Mus_musculus 0 614
ENSMUST00000179566 Gm6132-201 processed_pseudogene Mus_musculus 0 582
ENSMUST00000159789 H3f3a-007 protein_coding Mus_musculus 0 582
ENSMUST00000120752 Gm3835-001 processed_pseudogene Mus_musculus 0 580
ENSMUST00000169993 Gm17136-001 processed_pseudogene Mus_musculus 0 571
ENSMUST00000171334 Gm4938-201 processed_pseudogene Mus_musculus 0 568
ENSMUST00000121683 Gm12950-001 processed_pseudogene Mus_musculus 0 549
ENSMUST00000121719 Gm12271-001 processed_pseudogene Mus_musculus 0 529
ENSMUST00000183321 Gm26980-001 processed_pseudogene Mus_musculus 0 529
ENSMUST00000179046 Gm7426-201 pseudogene Mus_musculus 0 521
ENSMUST00000120136 Gm15763-001 processed_pseudogene Mus_musculus 0 510
ENSMUST00000117894 Gm14529-001 processed_pseudogene Mus_musculus 0 507
ENSMUST00000186232 RP23-128A11.4-001 processed_pseudogene Mus_musculus 0 475
ENSMUST00000159441 H3f3a-005 retained_intron Mus_musculus 0 457
ENSMUST00000118436 Gm13349-001 processed_pseudogene Mus_musculus 0 455
ENSMUST00000121637 Gm14383-001 processed_pseudogene Mus_musculus 0 436
ENSMUST00000116640 Gm14807-001 processed_pseudogene Mus_musculus 0 399
ENSMUST00000120730 Gm15220-001 processed_pseudogene Mus_musculus 0 398
ENSMUST00000119660 Gm8757-001 processed_pseudogene Mus_musculus 0 344
ENSMUST00000077630 RP23-249L15.2-001 processed_pseudogene Mus_musculus 0 344
ENSMUST00000118617 Gm12513-001 processed_pseudogene Mus_musculus 0 316
ENSMUST00000174739 Gm20545-001 processed_pseudogene Mus_musculus 0 311
ENSMUST00000162118 H3f3a-002 protein_coding Mus_musculus 0 279
ENSMUST00000159685 H3f3a-004 protein_coding Mus_musculus 0 270
ENSMUST00000137042 Gm15905-001 processed_pseudogene Mus_musculus 0 252
ENSMUST00000118841 Gm14669-001 processed_pseudogene Mus_musculus 0 224
ENSMUST00000119709 Gm14937-001 processed_pseudogene Mus_musculus 0 191

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