C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone cluster 1, H3, pseudogene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000404612 HIST1H3PS1-001 ENSG00000220875 9606 - 6:26321876-26322292 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000404612
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000404612 0.135±0.00 0.093±0.00 0.338±0.00 0.314±0.00 0.086±0.00 0.341±0.00 0.293±0.00 0.532±0.00 0.082±0.00 0.116±0.00 0.231±0.11

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000081026 H3f3a-006 protein_coding Mus_musculus 0 538
ENSMUST00000119459 H3f3c-001 processed_pseudogene Mus_musculus 0 525
ENSMUST00000162814 H3f3a-003 protein_coding Mus_musculus 0 525
ENSMUST00000161308 H3f3a-001 protein_coding Mus_musculus 0 525
ENSMUST00000179671 Gm10257-201 processed_pseudogene Mus_musculus 0 514
ENSMUST00000077016 Gm6421-201 processed_pseudogene Mus_musculus 0 514
ENSMUST00000119546 H3f3a-ps1-001 processed_pseudogene Mus_musculus 0 510
ENSMUST00000119544 H3f3a-ps2-001 processed_pseudogene Mus_musculus 0 508
ENSMUST00000119560 Gm12657-001 processed_pseudogene Mus_musculus 0 503
ENSMUST00000121118 Gm13529-001 processed_pseudogene Mus_musculus 0 488
ENSMUST00000120752 Gm3835-001 processed_pseudogene Mus_musculus 0 455
ENSMUST00000179566 Gm6132-201 processed_pseudogene Mus_musculus 0 453
ENSMUST00000169993 Gm17136-001 processed_pseudogene Mus_musculus 0 444
ENSMUST00000121719 Gm12271-001 processed_pseudogene Mus_musculus 0 442
ENSMUST00000159789 H3f3a-007 protein_coding Mus_musculus 0 436
ENSMUST00000171334 Gm4938-201 processed_pseudogene Mus_musculus 0 433
ENSMUST00000121683 Gm12950-001 processed_pseudogene Mus_musculus 0 420
ENSMUST00000183321 Gm26980-001 processed_pseudogene Mus_musculus 0 407
ENSMUST00000117894 Gm14529-001 processed_pseudogene Mus_musculus 0 403
ENSMUST00000120136 Gm15763-001 processed_pseudogene Mus_musculus 0 401
ENSMUST00000121637 Gm14383-001 processed_pseudogene Mus_musculus 0 390
ENSMUST00000159441 H3f3a-005 retained_intron Mus_musculus 0 363
ENSMUST00000118436 Gm13349-001 processed_pseudogene Mus_musculus 0 350
ENSMUST00000186232 RP23-128A11.4-001 processed_pseudogene Mus_musculus 0 339
ENSMUST00000116640 Gm14807-001 processed_pseudogene Mus_musculus 0 316
ENSMUST00000120730 Gm15220-001 processed_pseudogene Mus_musculus 0 315
ENSMUST00000119660 Gm8757-001 processed_pseudogene Mus_musculus 0 281
ENSMUST00000118617 Gm12513-001 processed_pseudogene Mus_musculus 0 265
ENSMUST00000077630 RP23-249L15.2-001 processed_pseudogene Mus_musculus 0 261
ENSMUST00000174739 Gm20545-001 processed_pseudogene Mus_musculus 0 244
ENSMUST00000162118 H3f3a-002 protein_coding Mus_musculus 0 206
ENSMUST00000159685 H3f3a-004 protein_coding Mus_musculus 0 196
ENSMUST00000137042 Gm15905-001 processed_pseudogene Mus_musculus 0 195

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