C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000421430 RP11-4M23.4-001 ENSG00000230228 9606 - 1:23949016-23949383 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungMuscleOvaryTestisENST00000421430
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Muscle Ovary Testis
ENST00000421430 0.096±0.00 0.098±0.00 0.053±0.00 0.050±0.00 0.046±0.00 0.101±0.00 0.044±0.00 0.046±0.00 0.173±0.00 0.355±0.00 0.194±0.08

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000179671 Gm10257-201 processed_pseudogene Mus_musculus 0 481
ENSMUST00000162814 H3f3a-003 protein_coding Mus_musculus 0 481
ENSMUST00000161308 H3f3a-001 protein_coding Mus_musculus 0 481
ENSMUST00000119459 H3f3c-001 processed_pseudogene Mus_musculus 0 475
ENSMUST00000119560 Gm12657-001 processed_pseudogene Mus_musculus 0 472
ENSMUST00000119546 H3f3a-ps1-001 processed_pseudogene Mus_musculus 0 470
ENSMUST00000119544 H3f3a-ps2-001 processed_pseudogene Mus_musculus 0 464
ENSMUST00000077016 Gm6421-201 processed_pseudogene Mus_musculus 0 464
ENSMUST00000081026 H3f3a-006 protein_coding Mus_musculus 0 460
ENSMUST00000121118 Gm13529-001 processed_pseudogene Mus_musculus 0 459
ENSMUST00000120752 Gm3835-001 processed_pseudogene Mus_musculus 0 431
ENSMUST00000169993 Gm17136-001 processed_pseudogene Mus_musculus 0 420
ENSMUST00000121719 Gm12271-001 processed_pseudogene Mus_musculus 0 416
ENSMUST00000179566 Gm6132-201 processed_pseudogene Mus_musculus 0 409
ENSMUST00000159789 H3f3a-007 protein_coding Mus_musculus 0 399
ENSMUST00000120136 Gm15763-001 processed_pseudogene Mus_musculus 0 372
ENSMUST00000183321 Gm26980-001 processed_pseudogene Mus_musculus 0 366
ENSMUST00000117894 Gm14529-001 processed_pseudogene Mus_musculus 0 357
ENSMUST00000179046 Gm7426-201 pseudogene Mus_musculus 0 348
ENSMUST00000186232 RP23-128A11.4-001 processed_pseudogene Mus_musculus 0 335
ENSMUST00000120730 Gm15220-001 processed_pseudogene Mus_musculus 0 333
ENSMUST00000121637 Gm14383-001 processed_pseudogene Mus_musculus 0 315
ENSMUST00000116640 Gm14807-001 processed_pseudogene Mus_musculus 0 309
ENSMUST00000118436 Gm13349-001 processed_pseudogene Mus_musculus 0 303
ENSMUST00000159441 H3f3a-005 retained_intron Mus_musculus 0 296
ENSMUST00000077630 RP23-249L15.2-001 processed_pseudogene Mus_musculus 0 278
ENSMUST00000119660 Gm8757-001 processed_pseudogene Mus_musculus 0 265
ENSMUST00000118617 Gm12513-001 processed_pseudogene Mus_musculus 0 231
ENSMUST00000137042 Gm15905-001 processed_pseudogene Mus_musculus 2.94273e-44 182
ENSMUST00000162118 H3f3a-002 protein_coding Mus_musculus 2e-40 169
ENSMUST00000118841 Gm14669-001 processed_pseudogene Mus_musculus 3e-39 165
ENSMUST00000159685 H3f3a-004 protein_coding Mus_musculus 3e-39 165
ENSMUST00000119709 Gm14937-001 processed_pseudogene Mus_musculus 5e-32 141

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