C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L9 pseudogene 31
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000495117 RPL9P31-001 ENSG00000239659 9606 + 18:58631259-58632120 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonKidneyENST00000495117
Transcript ID Adipose Breast Colon Kidney
ENST00000495117 0.021±0.00 0.105±0.00 0.019±0.00 0.021±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006OD CIL_0006OD_0001 CGP 18:58481247-58750139
CIL_00086L CIL_00086L_0001 VISTA 18:58504415-59107634

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000140507 Rpl9-ps7-001 processed_pseudogene Mus_musculus 0 416
ENSMUST00000120094 Rpl9-007 protein_coding Mus_musculus 0 416
ENSMUST00000057885 Rpl9-001 protein_coding Mus_musculus 0 416
ENSMUST00000075549 Rpl9-ps4-201 processed_pseudogene Mus_musculus 0 411
ENSMUST00000078034 Rpl9-ps6-201 protein_coding Mus_musculus 0 411
ENSMUST00000080545 Gm5451-201 processed_pseudogene Mus_musculus 0 399
ENSMUST00000182502 Rpl9-ps1-002 protein_coding Mus_musculus 0 379
ENSMUST00000117199 Rpl9-ps1-001 translated_processed_pseudogene Mus_musculus 0 379
ENSMUST00000118644 Gm8662-001 processed_pseudogene Mus_musculus 0 377
ENSMUST00000077111 RP23-4E15.2-001 processed_pseudogene Mus_musculus 0 370
ENSMUST00000120090 Gm14231-001 processed_pseudogene Mus_musculus 0 361
ENSMUST00000121601 Gm12110-001 processed_pseudogene Mus_musculus 0 351
ENSMUST00000120821 Rpl9-ps2-001 processed_pseudogene Mus_musculus 0 331
ENSMUST00000120661 Gm9159-001 processed_pseudogene Mus_musculus 0 309
ENSMUST00000117749 Gm11462-001 processed_pseudogene Mus_musculus 0 287
ENSMUST00000117594 Gm12795-001 processed_pseudogene Mus_musculus 0 268
ENSMUST00000173020 Gm5227-001 processed_pseudogene Mus_musculus 0 265
ENSMUST00000117730 Gm7206-001 processed_pseudogene Mus_musculus 0 265
ENSMUST00000129885 Gm14562-001 processed_pseudogene Mus_musculus 0 243
ENSMUST00000190216 RP23-347F2.3-001 processed_pseudogene Mus_musculus 0 195
ENSMUST00000183960 Gm27161-001 processed_pseudogene Mus_musculus 0 189
ENSMUST00000147966 Rpl9-009 retained_intron Mus_musculus 2e-38 163
ENSMUST00000120765 Gm17014-001 processed_pseudogene Mus_musculus 3e-36 156
ENSMUST00000122344 Gm15077-001 processed_pseudogene Mus_musculus 3e-36 156
ENSMUST00000140879 Rpl9-010 retained_intron Mus_musculus 0.000000001 68
ENSMUST00000151917 Rpl9-008 retained_intron Mus_musculus 0.000000001 68
ENSMUST00000118543 Rpl9-006 protein_coding Mus_musculus 0.000000001 68
ENSMUST00000128074 Rpl9-002 retained_intron Mus_musculus 0.000000001 68

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