C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000463864 CTD-2290C23.1-001 ENSG00000224282 9606 - 5:31822561-31823136 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000463864
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000463864 0.125±0.00 0.213±0.00 0.507±0.00 0.132±0.05 0.311±0.00 0.229±0.00 0.159±0.01 0.209±0.00 0.073±0.00 0.206±0.00 0.437±0.33 0.107±0.00 0.121±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00021E CIL_00021E_0002 CGP 5:31639410-32174350

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000080545 Gm5451-201 processed_pseudogene Mus_musculus 0 636
ENSMUST00000120094 Rpl9-007 protein_coding Mus_musculus 0 636
ENSMUST00000057885 Rpl9-001 protein_coding Mus_musculus 0 636
ENSMUST00000075549 Rpl9-ps4-201 processed_pseudogene Mus_musculus 0 630
ENSMUST00000078034 Rpl9-ps6-201 protein_coding Mus_musculus 0 630
ENSMUST00000140507 Rpl9-ps7-001 processed_pseudogene Mus_musculus 0 625
ENSMUST00000182502 Rpl9-ps1-002 protein_coding Mus_musculus 0 604
ENSMUST00000117199 Rpl9-ps1-001 translated_processed_pseudogene Mus_musculus 0 604
ENSMUST00000119147 Rpl9-ps3-001 processed_pseudogene Mus_musculus 0 597
ENSMUST00000121601 Gm12110-001 processed_pseudogene Mus_musculus 0 582
ENSMUST00000077111 RP23-4E15.2-001 processed_pseudogene Mus_musculus 0 568
ENSMUST00000120090 Gm14231-001 processed_pseudogene Mus_musculus 0 560
ENSMUST00000120821 Rpl9-ps2-001 processed_pseudogene Mus_musculus 0 551
ENSMUST00000118543 Rpl9-006 protein_coding Mus_musculus 0 551
ENSMUST00000061905 Gm20445-001 processed_pseudogene Mus_musculus 0 503
ENSMUST00000120661 Gm9159-001 processed_pseudogene Mus_musculus 0 494
ENSMUST00000119091 Gm8087-001 processed_pseudogene Mus_musculus 0 483
ENSMUST00000117749 Gm11462-001 processed_pseudogene Mus_musculus 0 472
ENSMUST00000147660 Rpl9-004 retained_intron Mus_musculus 0 459
ENSMUST00000118836 Gm12741-001 processed_pseudogene Mus_musculus 0 455
ENSMUST00000120283 Gm14927-001 processed_pseudogene Mus_musculus 0 398
ENSMUST00000190216 RP23-347F2.3-001 processed_pseudogene Mus_musculus 0 374
ENSMUST00000122349 Gm12738-001 processed_pseudogene Mus_musculus 0 364
ENSMUST00000150815 Rpl9-005 retained_intron Mus_musculus 0 302
ENSMUST00000128074 Rpl9-002 retained_intron Mus_musculus 0 302
ENSMUST00000127874 Rpl9-003 protein_coding Mus_musculus 0 272
ENSMUST00000117292 Gm15516-001 processed_pseudogene Mus_musculus 0 230
ENSMUST00000120358 Gm15037-001 processed_pseudogene Mus_musculus 0 189
ENSMUST00000120765 Gm17014-001 processed_pseudogene Mus_musculus 4.06377e-44 182
ENSMUST00000140879 Rpl9-010 retained_intron Mus_musculus 1e-25 121

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