C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L9 pseudogene 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000424673 RPL9P2-001 ENSG00000234324 9606 + 17:15443639-15444191 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainHeartKidneyMuscleOvaryTestisENST00000424673
Transcript ID Adipose Adrenal Brain Heart Kidney Muscle Ovary Testis
ENST00000424673 0.046±0.00 0.060±0.00 0.049±0.00 0.189±0.00 0.047±0.00 0.102±0.00 0.057±0.01 0.162±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QF CIL_0008QF_0001 VISTA 17:15144744-15748248

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000078034 Rpl9-ps6-201 protein_coding Mus_musculus 0 457
ENSMUST00000140507 Rpl9-ps7-001 processed_pseudogene Mus_musculus 0 451
ENSMUST00000120094 Rpl9-007 protein_coding Mus_musculus 0 451
ENSMUST00000057885 Rpl9-001 protein_coding Mus_musculus 0 451
ENSMUST00000075549 Rpl9-ps4-201 processed_pseudogene Mus_musculus 0 446
ENSMUST00000080545 Gm5451-201 processed_pseudogene Mus_musculus 0 440
ENSMUST00000120661 Gm9159-001 processed_pseudogene Mus_musculus 0 436
ENSMUST00000182502 Rpl9-ps1-002 protein_coding Mus_musculus 0 409
ENSMUST00000117199 Rpl9-ps1-001 translated_processed_pseudogene Mus_musculus 0 409
ENSMUST00000119147 Rpl9-ps3-001 processed_pseudogene Mus_musculus 0 407
ENSMUST00000120090 Gm14231-001 processed_pseudogene Mus_musculus 0 385
ENSMUST00000121601 Gm12110-001 processed_pseudogene Mus_musculus 0 385
ENSMUST00000077111 RP23-4E15.2-001 processed_pseudogene Mus_musculus 0 383
ENSMUST00000120821 Rpl9-ps2-001 processed_pseudogene Mus_musculus 0 383
ENSMUST00000117749 Gm11462-001 processed_pseudogene Mus_musculus 0 353
ENSMUST00000117730 Gm7206-001 processed_pseudogene Mus_musculus 0 307
ENSMUST00000173020 Gm5227-001 processed_pseudogene Mus_musculus 0 291
ENSMUST00000120283 Gm14927-001 processed_pseudogene Mus_musculus 0 279
ENSMUST00000117594 Gm12795-001 processed_pseudogene Mus_musculus 0 263
ENSMUST00000121372 Gm14732-001 processed_pseudogene Mus_musculus 1e-34 150
ENSMUST00000147966 Rpl9-009 retained_intron Mus_musculus 1e-34 150
ENSMUST00000140879 Rpl9-010 retained_intron Mus_musculus 2e-23 113
ENSMUST00000151917 Rpl9-008 retained_intron Mus_musculus 2e-23 113
ENSMUST00000118543 Rpl9-006 protein_coding Mus_musculus 2e-23 113
ENSMUST00000128074 Rpl9-002 retained_intron Mus_musculus 2e-23 113

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