C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L9 pseudogene 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000330965 RPL9P7-001 ENSG00000238103 9606 - X:23836742-23837321 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLungMuscleOvaryPlacentaENST00000330965
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Lung Muscle Ovary Placenta
ENST00000330965 0.023±0.00 0.190±0.00 0.049±0.00 0.396±0.00 0.022±0.00 0.167±0.00 0.218±0.00 0.042±0.00 0.134±0.13 0.082±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002WD CIL_0002WD_0002 CGP X:23783158-23907934

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000120094 Rpl9-007 protein_coding Mus_musculus 0 747
ENSMUST00000057885 Rpl9-001 protein_coding Mus_musculus 0 747
ENSMUST00000140507 Rpl9-ps7-001 processed_pseudogene Mus_musculus 0 741
ENSMUST00000075549 Rpl9-ps4-201 processed_pseudogene Mus_musculus 0 741
ENSMUST00000078034 Rpl9-ps6-201 protein_coding Mus_musculus 0 741
ENSMUST00000080545 Gm5451-201 processed_pseudogene Mus_musculus 0 730
ENSMUST00000182502 Rpl9-ps1-002 protein_coding Mus_musculus 0 682
ENSMUST00000117199 Rpl9-ps1-001 translated_processed_pseudogene Mus_musculus 0 682
ENSMUST00000119147 Rpl9-ps3-001 processed_pseudogene Mus_musculus 0 680
ENSMUST00000121601 Gm12110-001 processed_pseudogene Mus_musculus 0 664
ENSMUST00000118644 Gm8662-001 processed_pseudogene Mus_musculus 0 652
ENSMUST00000077111 RP23-4E15.2-001 processed_pseudogene Mus_musculus 0 651
ENSMUST00000120090 Gm14231-001 processed_pseudogene Mus_musculus 0 643
ENSMUST00000120821 Rpl9-ps2-001 processed_pseudogene Mus_musculus 0 628
ENSMUST00000118543 Rpl9-006 protein_coding Mus_musculus 0 617
ENSMUST00000120661 Gm9159-001 processed_pseudogene Mus_musculus 0 588
ENSMUST00000119091 Gm8087-001 processed_pseudogene Mus_musculus 0 571
ENSMUST00000061905 Gm20445-001 processed_pseudogene Mus_musculus 0 542
ENSMUST00000174221 Rpl9-ps5-001 processed_pseudogene Mus_musculus 0 540
ENSMUST00000117749 Gm11462-001 processed_pseudogene Mus_musculus 0 521
ENSMUST00000173020 Gm5227-001 processed_pseudogene Mus_musculus 0 521
ENSMUST00000147660 Rpl9-004 retained_intron Mus_musculus 0 508
ENSMUST00000118836 Gm12741-001 processed_pseudogene Mus_musculus 0 499
ENSMUST00000117594 Gm12795-001 processed_pseudogene Mus_musculus 0 470
ENSMUST00000117730 Gm7206-001 processed_pseudogene Mus_musculus 0 466
ENSMUST00000120283 Gm14927-001 processed_pseudogene Mus_musculus 0 462
ENSMUST00000190216 RP23-347F2.3-001 processed_pseudogene Mus_musculus 0 425
ENSMUST00000121372 Gm14732-001 processed_pseudogene Mus_musculus 0 346
ENSMUST00000150815 Rpl9-005 retained_intron Mus_musculus 0 318
ENSMUST00000128074 Rpl9-002 retained_intron Mus_musculus 0 318
ENSMUST00000127874 Rpl9-003 protein_coding Mus_musculus 0 294
ENSMUST00000147966 Rpl9-009 retained_intron Mus_musculus 0 252
ENSMUST00000117292 Gm15516-001 processed_pseudogene Mus_musculus 0 241
ENSMUST00000140879 Rpl9-010 retained_intron Mus_musculus 0 195
ENSMUST00000129885 Gm14562-001 processed_pseudogene Mus_musculus 9.99995e-41 171
ENSMUST00000151917 Rpl9-008 retained_intron Mus_musculus 4e-30 135

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